View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3869_high_4 (Length: 276)
Name: NF3869_high_4
Description: NF3869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3869_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 42 - 257
Target Start/End: Original strand, 329776 - 329991
Alignment:
| Q |
42 |
cacagaaaagaaacatgaaacaattttcattgagctcaatgcttaaacacacttcaatcctattagtgcagagtaaagtcttcttagaagcaggcatcta |
141 |
Q |
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| T |
329776 |
cacagaaaagaaacatgaaacaattttcattgagctcaatgcttaaacacacttcaatcctattagtgcagagtaaagtcttcttagaagcaggcatcta |
329875 |
T |
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| Q |
142 |
ataggcagcaacagcagagagcagcacaactgcaccaatatacaaacgcaaacaagttagtacgagtagtgaaaaatatacatacaattcgaagcagcaa |
241 |
Q |
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| T |
329876 |
ataggcagcaacagcagagagcagcacaactgcaccaatatacaaacgcaaacaagttagtacgagtggtgaaaaatatatatacaattcgaagcagcaa |
329975 |
T |
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| Q |
242 |
acatacaatatcttct |
257 |
Q |
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|||||||||||||||| |
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| T |
329976 |
acatacaatatcttct |
329991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 48030662 - 48030582
Alignment:
| Q |
107 |
gtgcagagtaaagtcttcttagaagcaggcatctaataggcagcaacagcagagagcagcacaactgcaccaatatacaaa |
187 |
Q |
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| T |
48030662 |
gtgcaaagtaatgtcttctcaaaagcatgcatccaagagacagcaacagcagagagcagccaagctgcaacaatttacaaa |
48030582 |
T |
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