View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3869_high_5 (Length: 274)
Name: NF3869_high_5
Description: NF3869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3869_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 44 - 259
Target Start/End: Complemental strand, 36613265 - 36613056
Alignment:
| Q |
44 |
tccaagcaaaacagaaagaagaaatagaaatccctcacctgggtggcagggttaaccgatcctgacactgtgatactgttctctgtaacaagtagaagaa |
143 |
Q |
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| T |
36613265 |
tccaagcaaaacagaaagaagaaatagaaatccctcacctgggtggcagggttaaccgatcctgacactgtaatactgttctctgtgacaagtagaagaa |
36613166 |
T |
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| Q |
144 |
ttctattataaataaatattatataatagataaacccagaaaagaattacnnnnnnnnnnnnnnnnggtacaatcctaacctcaaaacgaagagagagaa |
243 |
Q |
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| T |
36613165 |
ttctattataaataaatattataaaatagataaacccagaaaagaattac------agagagagagggtacaatcctaacctcaaaacgaagagagagaa |
36613072 |
T |
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| Q |
244 |
cagtggatatgataat |
259 |
Q |
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||||| |||||||||| |
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| T |
36613071 |
cagtgtatatgataat |
36613056 |
T |
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