View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3869_high_6 (Length: 260)
Name: NF3869_high_6
Description: NF3869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3869_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 11106871 - 11106642
Alignment:
| Q |
20 |
atccattggtgacatattgtcttgcacaactctaccttcactaagacattgagtcatgagtaatgtcatctcttgctccctattatcttttctttgtttc |
119 |
Q |
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| T |
11106871 |
atccattgttgacatattgtcttgcacaactctaccttcactaagacattgagtcatgagtaatgtcatctcttgctccctgttatcttttctttgtttc |
11106772 |
T |
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| Q |
120 |
atcaatttctcttcagccttcagaaccctttgtgccaagaaagtctcttggttcatcattttcttgcacttttgaaactcgtgcagtgccatgaattttg |
219 |
Q |
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| T |
11106771 |
atcaatttctcttcagccttcagaaccctttgtgccaagaaagtctcttggttcatcattttcttgcacttttgaaactcgtgcagttccatgaattttg |
11106672 |
T |
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| Q |
220 |
agagcacagtttggaccccttctgatgatg |
249 |
Q |
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| T |
11106671 |
agagcacagattggaccccttctggtgatg |
11106642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 10987161 - 10986932
Alignment:
| Q |
20 |
atccattggtgacatattgtcttgcacaactctaccttcactaagacattgagtcatgagtaatgtcatctcttgctccctattatcttttctttgtttc |
119 |
Q |
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| T |
10987161 |
atccattgttgacatattgtcgtgcacaactctaccttcattgagacattgagacatgattattgtcatctcttgttccctattttcttttctttgtttc |
10987062 |
T |
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| Q |
120 |
atcaatttctcttcagccttcagaaccctttgtgccaagaaagtctcttggttcatcattttcttgcacttttgaaactcgtgcagtgccatgaattttg |
219 |
Q |
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| T |
10987061 |
tttagtttctcttcagccttcaaaacactttgtgtcaagaaagtttcttggttcatcattttcttgcacttttggaactcgtgcagtgccatgaattttg |
10986962 |
T |
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| Q |
220 |
agagcacagtttggaccccttctgatgatg |
249 |
Q |
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| T |
10986961 |
agagcacagattggaccccttctggtgatg |
10986932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 35 - 249
Target Start/End: Complemental strand, 11096161 - 11095947
Alignment:
| Q |
35 |
attgtcttgcacaactctaccttcactaagacattgagtcatgagtaatgtcatctcttgctccctattatcttttctttgtttcatcaatttctcttca |
134 |
Q |
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| T |
11096161 |
attgtcgtgcacaactttaccttcattaagacattgagtcatgagtaatgtcatctcttgctccctattatcttttctttgtttcatcaatttctcttca |
11096062 |
T |
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| Q |
135 |
gccttcagaaccctttgtgccaagaaagtctcttggttcatcattttcttgcacttttgaaactcgtgcagtgccatgaattttgagagcacagtttgga |
234 |
Q |
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| T |
11096061 |
gccttcaaaaccctatgtgtcatgaaagtctcatggtccatctttttattgcacttctggaactcatgcattgtcatgaattttgagagcacagattgga |
11095962 |
T |
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| Q |
235 |
ccccttctgatgatg |
249 |
Q |
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| T |
11095961 |
caccttctggtgatg |
11095947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 9895039 - 9895111
Alignment:
| Q |
111 |
ctttgtttcatcaatttctcttcagccttcagaaccctttgtgccaagaaagtctcttggttcatcattttct |
183 |
Q |
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|||||| || ||| |||||||| |||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
9895039 |
ctttgtgtcttcagtttctctttggccttcagaaccctttgtatcatataagtctcttggttcatcattttct |
9895111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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