View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3869_high_7 (Length: 250)
Name: NF3869_high_7
Description: NF3869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3869_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43056789 - 43057026
Alignment:
| Q |
1 |
ttaaagcattatctaatagtattgaagtcaatttcttgatgtcccttttnnnnnnnnttacattcttcctaataattcagaagttctagtttctgcatta |
100 |
Q |
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| T |
43056789 |
ttaaagcattatctaatagtattgaagtcaatttcttgatgtcccttttaaaaaaaattacatccttcctaataattcagaagttctagtttctgcatta |
43056888 |
T |
|
| Q |
101 |
gacacaatatttctagctccaaatttgatttatgaaaatgtcttctactttccagatattcacttaaatctaatttccttaatacataa----cttgatt |
196 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43056889 |
gacacaatatttctagctccaaatttgaattatgaaaatgtctt------tccagatattcacttaaatctaatttccttaatacataattaacttgatt |
43056982 |
T |
|
| Q |
197 |
aactttttggttatttacaaccatgactttaaccaaggcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43056983 |
aactttttggttatttacaaccatgactttaaccaaggcctttg |
43057026 |
T |
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