View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3869_high_9 (Length: 248)
Name: NF3869_high_9
Description: NF3869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3869_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 43056751 - 43056529
Alignment:
| Q |
1 |
ttcatttcgtaaaagaaattgagaactgcattaatatacttttgagtgtgtaaagactataaataaatgtgttttaaacattcaaaaacatataatagag |
100 |
Q |
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| T |
43056751 |
ttcatttcgtaaaagaaattgagaactgcattaatatacttttgagtgtgtaaagactataaataaatgtgttttaaacattcaaaaacatataatagag |
43056652 |
T |
|
| Q |
101 |
gtcttcatttattcttaaatctcaacaagttctctgaatatgattaaacaatacacaaataagtaataaaaagggtaaataacaattcaaacaattcatt |
200 |
Q |
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| T |
43056651 |
gtcttcatttattcttaaatctcaacaagttctctgaatatgattaaacaatacacaaataagtaataaaaagggtaaataacaa---------ttcatt |
43056561 |
T |
|
| Q |
201 |
acaacatctcatattctcatcatacatataac |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
43056560 |
acaacatctcatattctcatcatacatataac |
43056529 |
T |
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