View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3869_low_1 (Length: 551)
Name: NF3869_low_1
Description: NF3869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3869_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 225 - 533
Target Start/End: Complemental strand, 33117167 - 33116867
Alignment:
| Q |
225 |
cattattaatgcagatcctaagaaaatagtcataaaccttaaaactaacataaactaactcaaccattctgagaggcgattctcttattccaaaacttga |
324 |
Q |
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| T |
33117167 |
cattattaatgcagatcctaagaaaatagtcataaac--------taactcaaactgactcaacccttctgagaggcgattctcttattccaaaacttga |
33117076 |
T |
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| Q |
325 |
attgcagagtcctttgttcaagcatcttctccacttcctcaattggaacacctttggtttctggtacgaaaacgaggacaaagaaaattgctatgacagc |
424 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
33117075 |
attgcagagtcctttgttgaagcatcttctccacttcctcaattggaacacctttggtttctggtacgaaaacgaggacaaaggaacttgctatgacagc |
33116976 |
T |
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| Q |
425 |
aacaattccaaacaacatgaatgtccatgcaactccaatagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgtt |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116975 |
aacaattccaaacaacatgaatgtccatgcaactccaatagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgtt |
33116876 |
T |
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| Q |
525 |
gaagccatt |
533 |
Q |
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| T |
33116875 |
gaagccatt |
33116867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 33117389 - 33117205
Alignment:
| Q |
1 |
tagtaaacaccaagcaagaatccttgccatcattgtgaatgagcgtgaataaagaatattgaaaacaaaaagacaaaacgattagatatttgagatgtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33117389 |
tagtaaacaccaagcaagaatccttgccatcattgtgaat----------aaagaatattgaaaacaaaaagacaaaacgattagatatttgagatgtga |
33117300 |
T |
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| Q |
101 |
aacagtgaaagctctaatttaccaaatgttgagtagtataattttatattcaca--------attcattccacttattttttaagctggtaatcc |
187 |
Q |
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| T |
33117299 |
aacagtgaaagctctaatttaccaaatgttgagtagcataattttatattcacaatgtggatattcattccacttattttttaagctggtaatcc |
33117205 |
T |
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