View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3869_low_11 (Length: 232)
Name: NF3869_low_11
Description: NF3869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3869_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 53052081 - 53052283
Alignment:
| Q |
14 |
cagagaaggaattcaaagatgactcgtaccaaaatataacaagatgaaggaagtacaccaagagagactaggacgnnnnnnnnn--ggacaatatattag |
111 |
Q |
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| T |
53052081 |
cagagaaggaattcaaagatgactcgtaccaaaatataacaagatggaggaagtacaccaagagagactaggacgaaaaaaaaaaaggacaatatattag |
53052180 |
T |
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| Q |
112 |
aggattcttgaaagctttgtagaaccaaagaagagtaattagtttctaaccgcatgtaattccaatgtttcggaattgtttgtttgggagatgaatatgc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
53052181 |
aggattcttgaaagctttgtagaaccaaagaagagtaattagtttctaaccacatgtaattccaatgtttcagaattgtttgtttgtgagatgaatatgc |
53052280 |
T |
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| Q |
212 |
tag |
214 |
Q |
| |
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||| |
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| T |
53052281 |
tag |
53052283 |
T |
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