View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3869_low_12 (Length: 206)
Name: NF3869_low_12
Description: NF3869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3869_low_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 26496171 - 26496082
Alignment:
| Q |
117 |
aaaacacttccattctattcatatcatattttacaacnnnnnnncaagaacatcttcaaacacaaacaaaggtttttcatcaaccgaaac |
206 |
Q |
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| T |
26496171 |
aaaacacttccattctattcatatcttattttacaacaaaaaaacaagaacatcttcaaacacaaacaaaggtttttcatcaaccgaaac |
26496082 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 42277678 - 42277730
Alignment:
| Q |
50 |
caatcttttcttctcttttttcttggctgttccaatccacctaatttccggat |
102 |
Q |
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| T |
42277678 |
caatcttttgttctcttctttcttggcagttccaatccatccaatttccggat |
42277730 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 46833507 - 46833543
Alignment:
| Q |
50 |
caatcttttcttctcttttttcttggctgttccaatc |
86 |
Q |
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| T |
46833507 |
caatcttttcttctcttctttcttggcagttccaatc |
46833543 |
T |
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