View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3869_low_3 (Length: 428)
Name: NF3869_low_3
Description: NF3869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3869_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 54818450 - 54818652
Alignment:
| Q |
26 |
ttgtagctcttaagtcttaatattaaataatgataaaattcttaggtataaaattgatttttaccttattccataattaaaagatggattagtacatggc |
125 |
Q |
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| T |
54818450 |
ttgtagctcttaagtcttaatattaaataatgataaaattcttaggtataaaattgatttttacctaattccagaattaaaagatggattagtacatggc |
54818549 |
T |
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| Q |
126 |
atctctcaccaacgcatgacactttatagcggttgaattgacagtgattcaccacgctatatatgtggcagtgacccaagtatggtgaaaaagacattta |
225 |
Q |
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| T |
54818550 |
atctctcaccaacgcatgacactttatagcggttgaattgacagtgattcagcacgctatatatgtggcagtgacccaagtatggtgaaaaagacattta |
54818649 |
T |
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| Q |
226 |
tga |
228 |
Q |
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||| |
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| T |
54818650 |
tga |
54818652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 242 - 387
Target Start/End: Original strand, 54818728 - 54818873
Alignment:
| Q |
242 |
tcttatattactagtttgccgtccaataaatttaaaagttaaggaaaatgaaaatgaatatgatttagaataaattatagaagttgttgagccgcaaaat |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54818728 |
tcttatattactagtttgccgtccaataaatttaaaagttaaggaaaatgagaatgaataagatttagaataaattatagaagttgttgagccgcaaaat |
54818827 |
T |
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| Q |
342 |
tatttatctatcttaaaagatgaattatagctgcaagattacttga |
387 |
Q |
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| T |
54818828 |
tatttatctatcttaaaagatgaattttagatgcaagattacttga |
54818873 |
T |
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