View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3869_low_4 (Length: 349)

Name: NF3869_low_4
Description: NF3869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3869_low_4
NF3869_low_4
[»] chr6 (2 HSPs)
chr6 (16-339)||(5035281-5035604)
chr6 (225-289)||(5034831-5034895)
[»] chr4 (4 HSPs)
chr4 (245-298)||(10452314-10452367)
chr4 (196-279)||(31957555-31957638)
chr4 (227-278)||(2041167-2041218)
chr4 (227-279)||(30788304-30788356)
[»] chr2 (1 HSPs)
chr2 (189-277)||(2336672-2336760)
[»] chr5 (1 HSPs)
chr5 (245-319)||(547235-547309)
[»] chr3 (1 HSPs)
chr3 (233-295)||(41249274-41249336)
[»] chr1 (1 HSPs)
chr1 (238-300)||(30960106-30960168)


Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 5035604 - 5035281
Alignment:
Q  16 catattctacttcaaacctattttaacatatttaatttattgacaaaaatattgtaagtgttgcattgacttgagatgaagtgttaatggaacattgtgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5035604 catattctacttcaaacctattttaacatatttaatttattgacaaaaatattgtaagtgttgcattgacttgagatgaagtgttaatggaacattgtgc 5035505  T
Q  116 aagaacttaaatgctattttagttgattgattctctggtttttgatttcttgttaagttcgactttgattataaacattttataagtgagagaatccaca 215  Q
    |||||||||  ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5035504 aagaacttaggtgctattttagttgattgattatctggtttttgattttttgttaagttcgactttgattataaacattttataagtgagagaatccaca 5035405  T
Q  216 aatataatattttaagtttttggataaagatgtggtgttcaactcacttgtgttgttgctcttggtctaatatgaatgatcctcgacctcccctcgtgac 315  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5035404 aatacaatattttaagtttttggataaagatgtggtgttcaactcacttgtgttgttgctcttggtctaatatgaatgatcctcgacctcccctcgtgac 5035305  T
Q  316 ctaataattgtattagagcctatg 339  Q
    ||||||||||||||||||||||||    
T  5035304 ctaataattgtattagagcctatg 5035281  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 5034895 - 5034831
Alignment:
Q  225 ttttaagtttttggataaagatgtggtgttcaactcacttgtgttgttgctcttggtctaatatg 289  Q
    ||||||| ||||||||||| || |||||| ||| |||||||||| ||||||||| ||| ||||||    
T  5034895 ttttaaggttttggataaaaatatggtgtacaattcacttgtgtggttgctcttagtccaatatg 5034831  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 10452367 - 10452314
Alignment:
Q  245 atgtggtgttcaactcacttgtgttgttgctcttggtctaatatgaatgatcct 298  Q
    |||||||||||||||||||||| | |||||||||| |||||| |||||||||||    
T  10452367 atgtggtgttcaactcacttgtatggttgctcttgatctaatgtgaatgatcct 10452314  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 31957555 - 31957638
Alignment:
Q  196 tataagtgagagaatccacaaatataatattttaagtttttggataaagatgtggtgttcaactcacttgtgttgttgctcttg 279  Q
    |||||||||||||||||| ||| | |||   ||||| |||||| | |||||||||||| ||||||||||| || ||||||||||    
T  31957555 tataagtgagagaatccataaacaaaatgccttaaggttttgggttaagatgtggtgtccaactcacttgcgtggttgctcttg 31957638  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 2041167 - 2041218
Alignment:
Q  227 ttaagtttttggataaagatgtggtgttcaactcacttgtgttgttgctctt 278  Q
    ||||| |||||| | |||||||||||| |||||||||||||| |||||||||    
T  2041167 ttaaggttttgggtgaagatgtggtgtccaactcacttgtgtggttgctctt 2041218  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 30788304 - 30788356
Alignment:
Q  227 ttaagtttttggataaagatgtggtgttcaactcacttgtgttgttgctcttg 279  Q
    ||||| |||||| | |||||||||||||||||||| ||| || ||||||||||    
T  30788304 ttaaggttttgggttaagatgtggtgttcaactcaattgagtggttgctcttg 30788356  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 2336672 - 2336760
Alignment:
Q  189 aacattttataagtgagagaatccacaaatataatattttaagtttttggataaagatgtggtgttcaactcacttgtgttgttgctct 277  Q
    |||| |||||||||||||| | ||| ||||  |||   ||||| |||||| | |||||||||||| |||||||||||||| ||||||||    
T  2336672 aacactttataagtgagaggacccataaattcaatgccttaagattttgggttaagatgtggtgtccaactcacttgtgtggttgctct 2336760  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 547309 - 547235
Alignment:
Q  245 atgtggtgttcaactcacttgtgttgttgctcttggtctaatatgaatgatcctcgacctcccctcgtgacctaa 319  Q
    |||||| || ||||||||||||||||||  |||||||  |||||| ||||||||| |  || |||||||||||||    
T  547309 atgtggagtccaactcacttgtgttgttattcttggttaaatatggatgatcctcaagttcacctcgtgacctaa 547235  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 41249336 - 41249274
Alignment:
Q  233 ttttggataaagatgtggtgttcaactcacttgtgttgttgctcttggtctaatatgaatgat 295  Q
    |||||||||||| ||| |||||||||||||||||||  || |||||| || ||| ||||||||    
T  41249336 ttttggataaagttgttgtgttcaactcacttgtgtgattactcttgatccaatgtgaatgat 41249274  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 30960168 - 30960106
Alignment:
Q  238 gataaagatgtggtgttcaactcacttgtgttgttgctcttggtctaatatgaatgatcctcg 300  Q
    |||||||||||||| | | |||||  ||||| ||||||||||| |||||||| ||||||||||    
T  30960168 gataaagatgtggtatactactcatatgtgtggttgctcttggcctaatatggatgatcctcg 30960106  T

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