View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3870_high_1 (Length: 714)
Name: NF3870_high_1
Description: NF3870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3870_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 9 - 611
Target Start/End: Complemental strand, 52726270 - 52725668
Alignment:
| Q |
9 |
agcaaaggtattaagaaactattacttacgaattggagaattatatattatttgttgaagttcctaataacttgcccttgcaaatcaattgaccgaaagt |
108 |
Q |
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| T |
52726270 |
agcaaaggtattaagaaactattacttacgaattggagaattatatattatttgttgaagttcctaataacttgcccttgtaaatcaattgaccgaaagt |
52726171 |
T |
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| Q |
109 |
tttgggatgcactaaatcttagataaaaagaacaagtattatttagatggaaatggaaacactaacagagacccacacatataatttctaagacgtgaaa |
208 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52726170 |
tttgagatgcactaaatcttagataaaaagaacaagtatcatttagatggaaatggaaacactaacagagacccacacatatgatttctaagacgtgaaa |
52726071 |
T |
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| Q |
209 |
ctttaagttgtttcaaggcgggccaagcatgaagattttgattgtcactcttaaagggtatcatcatcatcatttcggttggattcaatcaatatctcta |
308 |
Q |
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| T |
52726070 |
ctttaagttgtttcaaggcgggccaagcatgaagattttgattgtcactctcaaagggtatcatcatcatcatttcggttggattcaatcaatatctcta |
52725971 |
T |
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| Q |
309 |
atttctcatcattgcacatgtttaacgacatttacttaatcaggtgcatgaatctcaagcacaaaaagtacaaaactaactatagctaattgtgtttgaa |
408 |
Q |
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| T |
52725970 |
atttctcatcattgcacatgtttaacgacatttacttaatcaggtgcatgaatctcaagcacaaaaagtacaaaactaactatagctaattgtgtttgaa |
52725871 |
T |
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| Q |
409 |
acgaccagcaagatagaagcaataaaccatatgtgtatgtgccatgctttatcaatggccgaccgtatatgattgattttctaacaaagttaattcacat |
508 |
Q |
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| T |
52725870 |
acgaccagcaagatagaagcaataaaccatatgtgtatgtgccatgctttatcaatggccgaccgtatgtgattgattttctaacaaagctaattcacat |
52725771 |
T |
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| Q |
509 |
ttattctttgttaccctaattaatgaagttattatatagataagtttcaatctaattcatatttatatagtgtcaacttgatgcaagactttgataggct |
608 |
Q |
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| T |
52725770 |
ttattctttgttaccctaattaatgaagttattatatagataagtttcaatctaattcatatttacatagtgtcaacttgatgcaagactttgataggct |
52725671 |
T |
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| Q |
609 |
aaa |
611 |
Q |
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| T |
52725670 |
aaa |
52725668 |
T |
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