View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3870_high_16 (Length: 207)

Name: NF3870_high_16

Description: NF3870

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3870_high_16

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 169; E-Value: 8e-91

Query Start/End: Original strand, 17 - 189

Target Start/End: Original strand, 51990685 - 51990857

Alignment:

Q	17	caaagggcctaatcctcatcaaggtgttttgcgatattgatcagtctagcagtaggttttgaaacaaattagaacaagaaacagaatcaaatatatggat	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51990685	caaagggcctaatcctcatcaaggtgttttgcgatattgatcagtctagcagtaggttttgaaacaaattagaacaagaaacagaatcaaatatatggat	51990784	T

Q	117	gatgctgagatttagtaatgtgtttgttttggtaataagaacaagaacatgaaaatcactttatacctatttt	189	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51990785	gatgctgagatttagtaatatgtttgttttggtaataagaacaagaacatgaaaatcactttatacctatttt	51990857	T

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Target: chr4; HSP #2

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 17 - 91

Target Start/End: Complemental strand, 51996010 - 51995936

Alignment:

Q	17	caaagggcctaatcctcatcaaggtgttttgcgatattgatcagtctagcagtaggttttgaaacaaattagaac	91	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\|
T	51996010	caaagagcctaatcctcatcaaagtgttttgcgatattcatcagtctcgcagtagatattgatataaattagaac	51995936	T

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