View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3870_high_4 (Length: 461)
Name: NF3870_high_4
Description: NF3870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3870_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 2151698 - 2152119
Alignment:
| Q |
1 |
taaatatgtttgacagcaaattctcttccatttgagagtgtaatcaaaggttggttattcttgcaaacaacttcaaatcctgggtacacacatcgatcac |
100 |
Q |
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| T |
2151698 |
taaatatgtttgacaacaaattctcttccatttgagagtgtaatcaaaggttgcttattcttgcaaacaacttcaaatcctgggtacacacatcgatcac |
2151797 |
T |
|
| Q |
101 |
tttgagcattgttaatttgattttcttctcttaattggaaagggaactcnnnnnnnngttccgacgagtttccacaatgtctcttgtcacaaattggagc |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||| |
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| T |
2151798 |
tttgagcattgttaatttgattttcttttcttaattggaatgggaactcaaaaaaaagatccgacgagtttccacaatgtctcttgtcacacattggagc |
2151897 |
T |
|
| Q |
201 |
tgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt---------ggtgtgaat |
291 |
Q |
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| T |
2151898 |
tgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagtggtgcttgaggtgtgaat |
2151997 |
T |
|
| Q |
292 |
cactaaattgaaatattgattgtcaactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagtgttactcgtccctaatgtg |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151998 |
cactaaattgaaatattgattgtcaactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagtgttactcgtccctaatgtg |
2152097 |
T |
|
| Q |
392 |
ttaatttggattttttatatat |
413 |
Q |
| |
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|||||||||||| | ||||||| |
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| T |
2152098 |
ttaatttggattatatatatat |
2152119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 2146307 - 2146433
Alignment:
| Q |
20 |
attctcttccatttgagagtgtaatcaaaggttggttattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttg |
119 |
Q |
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||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |
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| T |
2146307 |
attcttttccatttgagagtgtaatcaaaggttgcttatttttgcaaacaacttcaaagcctgggtacacacatcgatcactttgattattgctaatttg |
2146406 |
T |
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| Q |
120 |
attttcttctcttaattggaaagggaa |
146 |
Q |
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| T |
2146407 |
attttcttctcttaattggaaagggaa |
2146433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 2142168 - 2142267
Alignment:
| Q |
9 |
tttgacagcaaattctcttccatttgagagtgtaatcaaaggttggt---tattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttga |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
2142168 |
tttgacaataaattctcttccatttgagagtgtaatcaaaggttggttcatattgttgcaataaacttcaaatcctgggtacccacatcgatcactttga |
2142267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 2142340 - 2142429
Alignment:
| Q |
189 |
acaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatga |
278 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||| |||| ||||||||| |||||||||||||||||| |
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| T |
2142340 |
acaaattggagctctgcttcttgttgagtgaaaaagcaagaggactatggaaaatatgaaagaaattttcatggtagccattagatatga |
2142429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 282
Target Start/End: Original strand, 2146513 - 2146599
Alignment:
| Q |
196 |
ggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt |
282 |
Q |
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|||| ||||||||||||||||||||||||||||| | ||||| |||| ||| ||||| |||||||||||||||| |||||||| |
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| T |
2146513 |
ggagttgtgctttttgttgagtgaaaaagcaagagaactatggaaaatatgaatgaaattctcaaggtagccattagtaatgagagt |
2146599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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