View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3870_high_7 (Length: 422)
Name: NF3870_high_7
Description: NF3870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3870_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 10 - 406
Target Start/End: Original strand, 3198631 - 3199027
Alignment:
| Q |
10 |
gcaaaggaattaagagtcctagctagcaagataatggaagtgttatctcttgaactagggttggaaggtggaaggttagaaaaagaagctggtggaatgg |
109 |
Q |
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| T |
3198631 |
gcaaaggaattaagagtcctagctagcaagataatggaagtgttatctcttgaactagggttggaaggtggaaggttagaaaaagaagctggtggaatgg |
3198730 |
T |
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| Q |
110 |
aagagcttttacttcaaatgaaaattaattactacccaatttgccctcaaccagagctagcacttggagttgaagcccatacagatgtaagttcacttac |
209 |
Q |
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| T |
3198731 |
aagagcttttacttcaaatgaaaattaattactacccaatttgccctcaaccagagctagcacttggagttgaagcccatacagatgtaagttcacttac |
3198830 |
T |
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| Q |
210 |
tttcctcctccataatatggtgccaggtttgcaacttttctatgagggcaaatgggtcactgcaaaatgtgtacctgattcaattctcatgcatattggt |
309 |
Q |
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| T |
3198831 |
tttcctcctccataatatggtgccaggtttgcaacttttctatgagggcaaatgggtcactgcaaaatgtgtacctgattcaattctcatgcatattggt |
3198930 |
T |
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| Q |
310 |
gacacaattgagatacttagcaatggaaagtacaaaagtatccttcatcgtggattggtgaataaggaaaaagttagaatatcttgggcagtgtttt |
406 |
Q |
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| T |
3198931 |
gacacaattgagatacttagcaatggaaagtacaaaagtatccttcatcgtggattggtgaataaggaaaaagttagaatatcttgggcagtgtttt |
3199027 |
T |
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