View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3870_high_8 (Length: 347)
Name: NF3870_high_8
Description: NF3870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3870_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 85 - 336
Target Start/End: Original strand, 5001876 - 5002131
Alignment:
| Q |
85 |
cccctccatacaacctactaaactactccttcaaaaacctctagaaccaccacttgacaccgtcccattcacagcaccatgtctccctaacaacacctta |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5001876 |
cccctccatacaacctactaaactactccttcaaaaacctctagaactaccacttgacaccgtcccattcacagcaacatgtctccctaacaacacctta |
5001975 |
T |
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| Q |
185 |
acccataaccctccttgattgaccctcaacctccaaaaccatttatctagtaaagtcaaattatagtcacgcacccgtctcaccactgaaccatcactat |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
5001976 |
acccataaccctccttgattgaccctcaacctccaaaaccatttatctagtaaagtcaaattatagtcacgcacccgtctcacctctaaaccatcactat |
5002075 |
T |
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| Q |
285 |
catgatct----acattttctaccatttttcccaatgatagttgcaagattactct |
336 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5002076 |
catgatctacacacattttctaccatttttcccaatgatagttgcaagattactct |
5002131 |
T |
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