View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3870_high_9 (Length: 325)

Name: NF3870_high_9
Description: NF3870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3870_high_9
NF3870_high_9
[»] chr7 (23 HSPs)
chr7 (10-310)||(3092125-3092424)
chr7 (27-141)||(2936188-2936302)
chr7 (27-143)||(9689286-9689403)
chr7 (36-143)||(1853292-1853399)
chr7 (27-142)||(42957424-42957539)
chr7 (36-138)||(45687693-45687794)
chr7 (30-142)||(25601798-25601910)
chr7 (27-141)||(43393893-43394007)
chr7 (36-143)||(24812926-24813033)
chr7 (27-139)||(15635272-15635384)
chr7 (36-138)||(10394471-10394573)
chr7 (27-104)||(11625147-11625224)
chr7 (27-139)||(15011954-15012066)
chr7 (46-143)||(19377094-19377192)
chr7 (27-143)||(27082593-27082709)
chr7 (27-143)||(27195592-27195708)
chr7 (27-143)||(14675580-14675689)
chr7 (27-142)||(27484944-27485060)
chr7 (27-127)||(28696628-28696729)
chr7 (88-134)||(17051888-17051934)
chr7 (88-142)||(27484820-27484873)
chr7 (88-134)||(41380643-41380689)
chr7 (88-141)||(15011865-15011918)
[»] chr4 (16 HSPs)
chr4 (27-142)||(8810063-8810178)
chr4 (27-143)||(13555663-13555780)
chr4 (27-142)||(9780392-9780507)
chr4 (27-142)||(5283785-5283900)
chr4 (36-143)||(49277726-49277833)
chr4 (36-142)||(16734245-16734350)
chr4 (28-142)||(16875937-16876051)
chr4 (43-142)||(8678889-8678989)
chr4 (36-142)||(49533226-49533332)
chr4 (27-124)||(42161401-42161498)
chr4 (60-122)||(25786326-25786388)
chr4 (28-141)||(21744885-21744998)
chr4 (90-142)||(23091876-23091928)
chr4 (90-141)||(49277880-49277931)
chr4 (86-127)||(16589233-16589274)
chr4 (90-139)||(49533131-49533180)
[»] chr3 (17 HSPs)
chr3 (27-142)||(23070058-23070173)
chr3 (27-142)||(43426390-43426505)
chr3 (36-142)||(25159023-25159129)
chr3 (27-142)||(7308194-7308308)
chr3 (27-142)||(55257704-55257819)
chr3 (27-143)||(17030713-17030829)
chr3 (27-107)||(25124867-25124947)
chr3 (27-143)||(17582496-17582614)
chr3 (42-139)||(30226269-30226366)
chr3 (36-142)||(7013229-7013335)
chr3 (46-143)||(5303654-5303751)
chr3 (27-142)||(45008060-45008176)
chr3 (27-142)||(18359295-18359410)
chr3 (88-142)||(17030593-17030646)
chr3 (42-127)||(37050180-37050265)
chr3 (89-134)||(48689330-48689375)
chr3 (90-134)||(38703057-38703101)
[»] chr2 (15 HSPs)
chr2 (27-142)||(42223210-42223325)
chr2 (27-143)||(11478051-11478167)
chr2 (27-142)||(35791149-35791264)
chr2 (36-142)||(11915182-11915288)
chr2 (27-142)||(16590602-16590716)
chr2 (42-143)||(41567314-41567415)
chr2 (59-142)||(41906206-41906289)
chr2 (42-127)||(31989522-31989607)
chr2 (42-127)||(31377718-31377803)
chr2 (42-142)||(31397428-31397528)
chr2 (42-104)||(959678-959740)
chr2 (88-136)||(15580625-15580673)
chr2 (25-87)||(23381341-23381403)
chr2 (86-126)||(11755803-11755843)
chr2 (89-125)||(39373219-39373255)
[»] chr1 (17 HSPs)
chr1 (27-143)||(13437002-13437118)
chr1 (27-142)||(5469477-5469592)
chr1 (42-142)||(7261487-7261587)
chr1 (27-139)||(25059868-25059980)
chr1 (27-142)||(33864206-33864321)
chr1 (27-142)||(33916601-33916716)
chr1 (54-133)||(5883008-5883087)
chr1 (59-135)||(15654057-15654133)
chr1 (70-142)||(22315210-22315282)
chr1 (27-142)||(17890132-17890246)
chr1 (27-103)||(9240621-9240697)
chr1 (27-143)||(44228429-44228544)
chr1 (45-124)||(22151971-22152050)
chr1 (60-142)||(44078716-44078798)
chr1 (62-95)||(5880548-5880581)
chr1 (27-139)||(16639541-16639654)
chr1 (89-134)||(19967820-19967865)
[»] chr8 (16 HSPs)
chr8 (36-142)||(9235481-9235587)
chr8 (36-142)||(23289044-23289150)
chr8 (27-143)||(23245676-23245792)
chr8 (31-142)||(13373240-13373351)
chr8 (36-142)||(5600308-5600413)
chr8 (36-142)||(5640207-5640312)
chr8 (42-125)||(24375771-24375853)
chr8 (42-143)||(28786365-28786466)
chr8 (42-139)||(11908468-11908565)
chr8 (42-127)||(12719165-12719249)
chr8 (27-104)||(24528923-24529000)
chr8 (63-139)||(8980741-8980817)
chr8 (88-134)||(10761678-10761724)
chr8 (89-134)||(25653777-25653822)
chr8 (60-136)||(26367312-26367388)
chr8 (68-104)||(28999390-28999426)
[»] chr6 (8 HSPs)
chr6 (27-124)||(9662871-9662968)
chr6 (27-142)||(9044584-9044699)
chr6 (27-143)||(3816551-3816666)
chr6 (27-139)||(25167038-25167150)
chr6 (23-142)||(334912-335031)
chr6 (42-94)||(6759772-6759824)
chr6 (45-121)||(20757608-20757684)
chr6 (43-139)||(33198591-33198686)
[»] scaffold0004 (1 HSPs)
scaffold0004 (27-139)||(82332-82444)
[»] scaffold0188 (1 HSPs)
scaffold0188 (45-143)||(13286-13385)
[»] scaffold0067 (1 HSPs)
scaffold0067 (27-139)||(25865-25976)
[»] chr5 (12 HSPs)
chr5 (27-143)||(13153598-13153714)
chr5 (27-143)||(17668735-17668851)
chr5 (27-142)||(21144023-21144138)
chr5 (36-142)||(37869504-37869611)
chr5 (27-142)||(20355199-20355314)
chr5 (27-143)||(15399675-15399793)
chr5 (28-104)||(42778989-42779064)
chr5 (55-125)||(20628040-20628110)
chr5 (46-124)||(31567804-31567882)
chr5 (36-88)||(17190850-17190902)
chr5 (65-142)||(38082925-38083002)
chr5 (91-143)||(31567696-31567747)
[»] scaffold0003 (2 HSPs)
scaffold0003 (42-127)||(306678-306762)
scaffold0003 (68-140)||(316627-316699)
[»] scaffold0110 (1 HSPs)
scaffold0110 (28-121)||(23194-23287)
[»] scaffold0142 (2 HSPs)
scaffold0142 (78-143)||(34499-34564)
scaffold0142 (27-82)||(34884-34939)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 3092424 - 3092125
Alignment:
Q  10 caatgatatggagatgagtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaaca 109  Q
    ||||||||||||   | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |    
T  3092424 caatgatatggaagggggtaaaccgtaattctctcaaattatagggggtgaaagtaccttaaattttataatttgatgtaatgaaggtttaaaatcaaaa 3092325  T
Q  110 aattttcaaattacaaggttgaaatctaaacaaannnnnnnacaaaaaagaaaatcagaaatcactaataaatattacagaggtaaacatatattaaccc 209  Q
    ||| || |||||||||||||||||||||||||||       ||||  | | ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  3092324 aatctttaaattacaaggttgaaatctaaacaaatttttttacaaggaggtaaaccagaaatcactaataaatattacagaagtaaacatatattaaccc 3092225  T
Q  210 tnnnnnnntatcaaattacaaggagaaaacctatgtgggacatgttctaagcaatgacatacattagtgtcctttttgtacgtttttccacctaacactc 309  Q
    |       |||||||| |||| ||| |||||| ||| ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||    
T  3092224 taaaaaaatatcaaatcacaacgaggaaacctgtgtcggacatgttctaagcaatgacatacatcactgtcctttttgtacg-ttttccacctaacactc 3092126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 2936302 - 2936188
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||  |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  |||| |||  ||||||||||||||| |    
T  2936302 gtaaacccaaattctctcaaattacagggggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtctaaaaccaaataattttcaaattacatg 2936203  T
Q  127 gttgaaatctaaaca 141  Q
    |||| ||||||||||    
T  2936202 gttggaatctaaaca 2936188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 9689403 - 9689286
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatc-aacaaattttcaaattacaa 125  Q
    |||||||| ||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||||||||     
T  9689403 gtaaaccgaaattctctcaaattacaagggacaaaagtaccttaaattttataatttgatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacag 9689304  T
Q  126 ggttgaaatctaaacaaa 143  Q
    ||||||||||||| ||||    
T  9689303 ggttgaaatctaaccaaa 9689286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 1853292 - 1853399
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    |||||||||||||| ||||||  ||||||||||||||||||  ||||||||| ||||||||| ||||||||| |||| ||||||||||||||||| ||||    
T  1853292 aattctctcaaatttcaggggacgaaagtaccttaaattttgaaatttgatgccatgaaggtccaaaatcaaaaaatcttcaaattacaaggttggaatc 1853391  T
Q  136 taaacaaa 143  Q
    ||||||||    
T  1853392 taaacaaa 1853399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 42957539 - 42957424
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    ||||| || ||||||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||| ||||||||| |||  ||||||||||| |    
T  42957539 gtaaatcgaaattctctcaaattacaagggacgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaatcaaaaaaaattcaaattacagg 42957440  T
Q  127 gttgaaatctaaacaa 142  Q
    |||  |||||||||||    
T  42957439 gttagaatctaaacaa 42957424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 45687794 - 45687693
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| || |||||||  ||| ||||||||||| ||||| ||||    
T  45687794 aattctctcaaattatagggggtgaaagtaccttaaattttataatttgatgccatgaagg-tctaaatcaaagaatcttcaaattacagggttggaatc 45687696  T
Q  136 taa 138  Q
    |||    
T  45687695 taa 45687693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 25601910 - 25601798
Alignment:
Q  30 aaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggtt 129  Q
    ||||| |||||||| ||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||  ||  ||| |||| ||||||||||||||||    
T  25601910 aaccgaaattctctaaaattacagggggcgaaagtacattaaattttgtaatttgatatcatgaaggttttaagccaaaaaatcttcaaattacaaggtt 25601811  T
Q  130 gaaatctaaacaa 142  Q
    | |||||||||||    
T  25601810 ggaatctaaacaa 25601798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 43393893 - 43394007
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||| | ||||||||||  ||||| |||  |||||||||||||||||| |||||||||| ||||||||| |||||| || |||| ||||||||||| |    
T  43393893 gtaaactgaaattctctcacgttacaagggtcgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaataaaaaaatcttcaaattacagg 43393992  T
Q  127 gttgaaatctaaaca 141  Q
    |||||||| ||||||    
T  43393993 gttgaaatttaaaca 43394007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 24812926 - 24813033
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    |||||| |||||||||| ||| ||||||||||||||||||| |||||||||| | | |||||  |||| |||  ||| ||||||||||| ||||||||||    
T  24812926 aattctttcaaattacaagggatgaaagtaccttaaattttgtaatttgatgccttaaaggtctaaaaccaaagaatcttcaaattacagggttgaaatc 24813025  T
Q  136 taaacaaa 143  Q
    ||||||||    
T  24813026 taaacaaa 24813033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 15635272 - 15635384
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    ||||| || ||||||||||| ||| |||||| ||||||||| ||||||||  ||||||||| ||| ||||||||||||||| | || |||||||||||      
T  15635272 gtaaaacgaaattctctcaagttatagggggcgaaagtaccataaattttgaaatttgatggcataaaggttcaaaatcaaaatatcttcaaattacaga 15635371  T
Q  127 gttgaaatctaaa 139  Q
    |||| ||||||||    
T  15635372 gttggaatctaaa 15635384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 10394573 - 10394471
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    ||||||||||||||| |  ||||| |||| ||||||||||||||||||||||  |||||| | ||||| |||  ||| |||||||||||| |||||||||    
T  10394573 aattctctcaaattataaagggtggaagtgccttaaattttataatttgatgctatgaagatacaaaaccaaagaatcttcaaattacaaagttgaaatc 10394474  T
Q  136 taa 138  Q
    |||    
T  10394473 taa 10394471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 11625147 - 11625224
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaat 104  Q
    |||||||| ||||||| |||| |||| |||| |||||||||||||||| | |||||||||||||||||||| ||||||    
T  11625147 gtaaaccgaaattctcacaaactacaaggggcgaaagtaccttaaattatgtaatttgatgtcatgaaggtccaaaat 11625224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 15011954 - 15012066
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| |||||||||||||||| | || | ||| |||||| |||||| |||||||||| | |||| ||||||||||||  ||| ||||||||||| |    
T  15011954 gtaaaccgaaattctctcaaattaccgaggataaaaataccttgaattttgtaatttgatgccgtgaatgttcaaaatcaaagaatcttcaaattacagg 15012053  T
Q  127 gttgaaatctaaa 139  Q
     ||| ||||||||    
T  15012054 attggaatctaaa 15012066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 19377094 - 19377192
Alignment:
Q  46 aattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattaca-aggttgaaatctaaacaaa 143  Q
    ||||||| |||| |||||||||||||||||| |||||||| | ||||||||| |||||| || | || |||||||||||  ||||| ||||||||||||    
T  19377094 aattacaaggggcgaaagtaccttaaattttgtaatttgacgccatgaaggtccaaaataaaaatatcttcaaattacaggggttggaatctaaacaaa 19377192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 27082709 - 27082593
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||  |||| ||||||||||||||||| |||||||||||||| ||| ||||||||| |||| || ||  |||| |||  ||| ||||| |||||      
T  27082709 gtaaaccaaaattatctcaaattacagggggcgaaagtaccttaaactttgtaatttgatttcataaatgtctaaaaccaaagaatcttcaagttacagt 27082610  T
Q  127 gttgaaatctaaacaaa 143  Q
    |||| ||||||||||||    
T  27082609 gttggaatctaaacaaa 27082593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 27195592 - 27195708
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||  |||| ||||||||||||||||| |||||||||||||| ||| ||||||||| |||| || ||  |||| |||  ||| ||||| |||||      
T  27195592 gtaaaccaaaattatctcaaattacagggggcgaaagtaccttaaactttgtaatttgatttcataaatgtctaaaaccaaagaatcttcaagttacagt 27195691  T
Q  127 gttgaaatctaaacaaa 143  Q
    |||| ||||||||||||    
T  27195692 gttggaatctaaacaaa 27195708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 14675689 - 14675580
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||  ||||||||||||||||||||||  ||||||| |||||||||       ||| ||||||| || |||||||||  ||| ||||||||||||     
T  14675689 gtaaaccaaaattctctcaaattacagggggcaaaagtactttaaatttt-------gatatcatgaaagtccaaaatcaaagaatcttcaaattacaat 14675597  T
Q  127 gttgaaatctaaacaaa 143  Q
    |||||||||| ||||||    
T  14675596 gttgaaatcttaacaaa 14675580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 27484944 - 27485060
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaat-caacaaattttcaaattacaa 125  Q
    |||||| | ||||||||||||||| || |||| |||||| |||||||||| |||||| ||| ||||||| | ||||||  || |||| |||||||||       
T  27484944 gtaaactgaaattctctcaaattatagagggtaaaagtatcttaaattttttaatttaatgccatgaagatccaaaataaaaaaaatcttcaaattatcg 27485043  T
Q  126 ggttgaaatctaaacaa 142  Q
     ||||||||||||||||    
T  27485044 cgttgaaatctaaacaa 27485060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 28696628 - 28696729
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagg-gggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaa 125  Q
    |||||||| ||||  |||||||||||   |||| |||||||| ||| |||| |||||||||||| ||||||| |||||||||  ||| || |||||||||    
T  28696628 gtaaaccgaaatttgctcaaattacaaaagggtaaaagtaccataagttttgtaatttgatgtcttgaaggtccaaaatcaaagaatattaaaattacaa 28696727  T
Q  126 gg 127  Q
    ||    
T  28696728 gg 28696729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 17051934 - 17051888
Alignment:
Q  88 tcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaat 134  Q
    |||||||||| ||||||||| |||| |||||||||||||| ||||||    
T  17051934 tcatgaaggtccaaaatcaaaaaatattcaaattacaaggatgaaat 17051888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 27484873 - 27484820
Alignment:
Q  88 tcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaacaa 142  Q
    |||||||| | ||||||||| |||| ||||||||||| |||||||||||||||||    
T  27484873 tcatgaagatccaaaatcaa-aaatcttcaaattacatggttgaaatctaaacaa 27484820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 41380643 - 41380689
Alignment:
Q  88 tcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaat 134  Q
    |||||||||||||||| ||| |||| |||||||||||||| ||||||    
T  41380643 tcatgaaggttcaaaagcaaaaaatcttcaaattacaaggatgaaat 41380689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 15011918 - 15011865
Alignment:
Q  88 tcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaaca 141  Q
    ||||| |||||||||| |||  ||| ||||||||||| ||||||||||||||||    
T  15011918 tcatgcaggttcaaaaccaaagaatcttcaaattacagggttgaaatctaaaca 15011865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 8810063 - 8810178
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| |||| |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||||||||||||    
T  8810063 gtaaaccgaaattttctcaaattacacgggacgaaagtaccttaaattttataatttgatgtcatgaaggtccaaaataaaaaaatcttcaaattacaag 8810162  T
Q  127 gttgaaatctaaacaa 142  Q
    |||||||||| |||||    
T  8810163 gttgaaatcttaacaa 8810178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 13555780 - 13555663
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatc-aacaaattttcaaattacaa 125  Q
    |||||||| ||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||||||||     
T  13555780 gtaaaccgaaattctctcaaattacaagggacaaaagtaccttaaattttataatttgatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacag 13555681  T
Q  126 ggttgaaatctaaacaaa 143  Q
    ||||||||||||| ||||    
T  13555680 ggttgaaatctaaccaaa 13555663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 9780507 - 9780392
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| |||| |||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||||  ||||||||  ||| ||||||||||| |    
T  9780507 gtaaaccgaaattatctcaaattacaggggatgaaagtaccttaaattttttaatttgatgccatgtaggtcgaaaatcaaagaatcttcaaattacagg 9780408  T
Q  127 gttgaaatctaaacaa 142  Q
    |||| |||||||||||    
T  9780407 gttggaatctaaacaa 9780392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 5283785 - 5283900
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| |||||  |||||||||| ||||  | ||||||||||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||| |    
T  5283785 gtaaaccgaaattccttcaaattacaaggggcaagagtaccttaaattttttaatttgatgccatgaaggttcaaaatcaaaaaatcttcaaattacagg 5283884  T
Q  127 gttgaaatctaaacaa 142  Q
     ||| |||||||||||    
T  5283885 attggaatctaaacaa 5283900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 49277833 - 49277726
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    ||||||| |||||||||| |||  ||||||||||||||||| |||||||||| ||||||||| ||||| |||  ||||||||||||||| ||||| ||||    
T  49277833 aattctcgcaaattacagagggcaaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaaccaaataattttcaaattacacggttggaatc 49277734  T
Q  136 taaacaaa 143  Q
    ||||||||    
T  49277733 taaacaaa 49277726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 16734245 - 16734350
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    |||||||||||||||||||| | |||| ||||||||||||| |||||| ||| |||||||||  ||||||||  ||| |||||||||| |||||||||||    
T  16734245 aattctctcaaattacagggtgcgaaaataccttaaattttgtaattttatgccatgaaggtctaaaatcaaagaatcttcaaattac-aggttgaaatc 16734343  T
Q  136 taaacaa 142  Q
    |||||||    
T  16734344 taaacaa 16734350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 16876051 - 16875937
Alignment:
Q  28 taaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaagg 127  Q
    ||||||| |||||||||||||||||||||   ||| ||||||||||||| |||||||||| ||| |||||  ||||||||  ||| |||||| |||||||    
T  16876051 taaaccgaaattctctcaaattacaggggacaaaaataccttaaattttgtaatttgatgccataaaggtcgaaaatcaaagaatcttcaaactacaagg 16875952  T
Q  128 ttgaaatctaaacaa 142  Q
    ||| |||||||||||    
T  16875951 ttgtaatctaaacaa 16875937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 8678989 - 8678889
Alignment:
Q  43 tcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaat-caacaaattttcaaattacaaggttgaaatctaaaca 141  Q
    |||||||||| | || |||||||||||||||||| |||||||||| ||||||||| ||||||  || |||| ||||||||||||||||  ||||||||||    
T  8678989 tcaaattacaagaggcgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaataaaaaaaatcttcaaattacaaggtttgaatctaaaca 8678890  T
Q  142 a 142  Q
    |    
T  8678889 a 8678889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 49533226 - 49533332
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    ||||||||||||||| | ||||  ||| ||| ||||||||| |||||||||||||||||||| ||||| |||  ||| ||||||||| ||||||  ||||    
T  49533226 aattctctcaaattataaggggcaaaaatacgttaaattttgtaatttgatgtcatgaaggtccaaaaccaaataatcttcaaattataaggttataatc 49533325  T
Q  136 taaacaa 142  Q
    |||||||    
T  49533326 taaacaa 49533332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 42161401 - 42161498
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattaca 124  Q
    ||||| || ||||||||||||||||| || | |||||||||||||||||| |||||||||| | | ||||| |||||| || | || |||||||||||    
T  42161401 gtaaatcgaaattctctcaaattacaaggagcgaaagtaccttaaattttgtaatttgatgccttcaaggtccaaaattaaaagatcttcaaattaca 42161498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 25786326 - 25786388
Alignment:
Q  60 aaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaatta 122  Q
    ||||||||||||| ||| |||||||||| |||||||||||||||||||  ||| |||||||||    
T  25786326 aaagtaccttaaaatttgtaatttgatgccatgaaggttcaaaatcaaagaatcttcaaatta 25786388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 21744885 - 21744998
Alignment:
Q  28 taaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaagg 127  Q
    ||||||| ||||||||||||||||| |  | ||||| |||| ||||||| |||||| | ||||||||  | ||||| |||  ||| ||||||||||| ||    
T  21744885 taaaccgaaattctctcaaattacaagaagcgaaagcacctaaaattttgtaatttcacgtcatgaaaatccaaaaccaaagaatattcaaattacatgg 21744984  T
Q  128 ttgaaatctaaaca 141  Q
    ||| ||||||||||    
T  21744985 ttggaatctaaaca 21744998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 23091876 - 23091928
Alignment:
Q  90 atgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaacaa 142  Q
    ||||||||||||||  || |||| ||||||||||||||||| |||||||||||    
T  23091876 atgaaggttcaaaactaaaaaatcttcaaattacaaggttggaatctaaacaa 23091928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 49277880 - 49277931
Alignment:
Q  90 atgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaaca 141  Q
    |||||||||||||| |||  ||| ||||||||||||||||| ||||||||||    
T  49277880 atgaaggttcaaaaccaaataatcttcaaattacaaggttggaatctaaaca 49277931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 16589233 - 16589274
Alignment:
Q  86 tgtcatgaaggttcaaaatcaacaaattttcaaattacaagg 127  Q
    |||||||||||| ||||||||| |||| ||||||||||||||    
T  16589233 tgtcatgaaggtccaaaatcaaaaaatcttcaaattacaagg 16589274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 49533180 - 49533131
Alignment:
Q  90 atgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaa 139  Q
    ||||| || |||||| || |||| ||||||||||||||||||||||||||    
T  49533180 atgaaagtccaaaatgaaaaaatcttcaaattacaaggttgaaatctaaa 49533131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 23070173 - 23070058
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    ||||| || ||||||||||||||| | |||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| || ||||||| ||    
T  23070173 gtaaatcgaaattctctcaaattagaaggggcgaaagtaccttaaattttataatttgatgtcacgaaggttcaaaatcaaaaaatctttaaattactag 23070074  T
Q  127 gttgaaatctaaacaa 142  Q
    ||||||||||||||||    
T  23070073 gttgaaatctaaacaa 23070058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 43426390 - 43426505
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| ||||||||||||||||||||||  ||||||||||||||||| ||||||||||  ||||||||  |||||||| |||| ||||||||||| |    
T  43426390 gtaaaccgaaattctctcaaattacagggggcaaaagtaccttaaattttgtaatttgatgctatgaaggtctaaaatcaaaaaatcttcaaattacagg 43426489  T
Q  127 gttgaaatctaaacaa 142  Q
    |||  |||||||||||    
T  43426490 gttcgaatctaaacaa 43426505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 25159023 - 25159129
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    ||||||||||||||||||| || |||| ||||||||||||| |||||||||| |||||| || ||||||||| |||| ||||||||||||||||  ||||    
T  25159023 aattctctcaaattacaggaggcgaaaataccttaaattttgtaatttgatgccatgaacgtccaaaatcaaaaaatattcaaattacaaggttagaatc 25159122  T
Q  136 taaacaa 142  Q
    |||||||    
T  25159123 taaacaa 25159129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 7308194 - 7308308
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| |||||||||||||||||||||  |||||||||||||||||| |||||||||| |||||||||  ||||| || |||| ||||||||| | |    
T  7308194 gtaaaccgaaattctctcaaattacaggggc-gaaagtaccttaaattttgtaatttgatgccatgaaggtcaaaaataaaaaaatcttcaaattatagg 7308292  T
Q  127 gttgaaatctaaacaa 142  Q
    |||| ||||| |||||    
T  7308293 gttggaatctgaacaa 7308308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 55257819 - 55257704
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||| | |||||| |||||||| | |||| |||||||||||||||||| |||||||||| ||||||||| |||||| || |||| ||||||||| | |    
T  55257819 gtaaactgaaattctatcaaattataaggggcgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaataaaaaaatcttcaaattatagg 55257720  T
Q  127 gttgaaatctaaacaa 142  Q
    |||| |||||||||||    
T  55257719 gttggaatctaaacaa 55257704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 17030713 - 17030829
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatc-aacaaattttcaaattacaa 125  Q
    |||||||  ||||||||||| ||||||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||| || |||| || |||||| |     
T  17030713 gtaaaccaaaattctctcaatttacagggg-tgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaatcaaaaaaatctttaaattagag 17030811  T
Q  126 ggttgaaatctaaacaaa 143  Q
    |||||||||| |||||||    
T  17030812 ggttgaaatcaaaacaaa 17030829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 25124947 - 25124867
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaa 107  Q
    |||||| | ||||||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  25124947 gtaaactgaaattctcccaaattacaaggggcgaaagtaccttaaattttataatttgatgccatgaaggtccaaaatcaa 25124867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 17582496 - 17582614
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaat--caacaaattttcaaattaca 124  Q
    |||||||| || |||||||||||||| |||| |||||||||||||||||| ||||||||||  |||||||| ||||||   || |||| |||||||||||    
T  17582496 gtaaaccgaaaatctctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgctatgaaggtccaaaataaaaaaaaatcttcaaattaca 17582595  T
Q  125 aggttgaaatctaaacaaa 143  Q
    |||||  ||| ||||||||    
T  17582596 aggtttgaatttaaacaaa 17582614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 30226269 - 30226366
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaa 139  Q
    |||||| |||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||||||  ||| |||||||||||| | || ||||||||    
T  30226269 ctcaaactacaaggggtgaaagtaccataaattttgtaatttgttgtcatgaaggtccaaaatcaaagaatcttcaaattacaatgatggaatctaaa 30226366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 7013335 - 7013229
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    ||||||||||||||||| |||| ||||||| |||||||||| |||||||||  |||||| || |||||||||  ||| ||||||||| |   ||||||||    
T  7013335 aattctctcaaattacatggggcgaaagtatcttaaattttgtaatttgataccatgaaagtccaaaatcaaataatcttcaaattatagaattgaaatc 7013236  T
Q  136 taaacaa 142  Q
    |||||||    
T  7013235 taaacaa 7013229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 5303654 - 5303751
Alignment:
Q  46 aattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaacaaa 143  Q
    |||||| ||| | ||||||||||||| || | ||||||||||||||||||||  |||| |||  ||| ||||||||||| ||||| ||||||||||||    
T  5303654 aattactgggagcgaaagtaccttaagttctgtaatttgatgtcatgaaggtctaaaaccaaagaatcttcaaattacagggttggaatctaaacaaa 5303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 45008060 - 45008176
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaat-caacaaattttcaaattacaa 125  Q
    |||||||| |||| | |||||||||| |||| |||||| ||||||||||| |||||||||| || ||| || ||||||  || |||| |||||||||||     
T  45008060 gtaaaccgaaattttatcaaattacaaggggcgaaagttccttaaattttgtaatttgatgccaagaatgtccaaaataaaaaaaatcttcaaattacag 45008159  T
Q  126 ggttgaaatctaaacaa 142  Q
     |||  |||||||||||    
T  45008160 agttagaatctaaacaa 45008176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 18359410 - 18359295
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||| ||| |||||||||||||||||| ||   ||||||||||||||||| |||||||||| |||| |  |  ||||  ||  ||| ||||||||||| |    
T  18359410 gtaatccgaaattctctcaaattacagcggactaaagtaccttaaattttgtaatttgatgccatgtatatctaaaactaaagaatcttcaaattacagg 18359311  T
Q  127 gttgaaatctaaacaa 142  Q
    |||| |||||||||||    
T  18359310 gttggaatctaaacaa 18359295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 17030646 - 17030593
Alignment:
Q  88 tcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaacaa 142  Q
    |||||||||| ||||| ||| |||| ||||||||||||||||| |||||||||||    
T  17030646 tcatgaaggtccaaaaccaa-aaatcttcaaattacaaggttggaatctaaacaa 17030593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 37050180 - 37050265
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtc-atgaaggttcaaaatcaacaaattttcaaattacaagg 127  Q
    ||||||||||| |||| |||||||||||||||||| ||| |||||||| | ||| || |||||||||  ||| ||||||||| ||||    
T  37050180 ctcaaattacaaggggcgaaagtaccttaaattttgtaa-ttgatgtcaaagaatgtccaaaatcaaagaatcttcaaattataagg 37050265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 48689330 - 48689375
Alignment:
Q  89 catgaaggttcaaaatcaacaaattttcaaattacaaggttgaaat 134  Q
    ||||||||| ||||||||| |||| |||||||||||||| ||||||    
T  48689330 catgaaggtccaaaatcaaaaaatcttcaaattacaaggatgaaat 48689375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 38703101 - 38703057
Alignment:
Q  90 atgaaggttcaaaatcaacaaattttcaaattacaaggttgaaat 134  Q
    |||||||||||||| ||| |||| |||||||||||||| ||||||    
T  38703101 atgaaggttcaaaaccaaaaaatcttcaaattacaaggatgaaat 38703057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 42223210 - 42223325
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| |||||| |||||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||| |    
T  42223210 gtaaaccgaaattctttcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgccatgaaggttcaaaatcaaaaaatcttcaaattacagg 42223309  T
Q  127 gttgaaatctaaacaa 142  Q
    |||| |||||||||||    
T  42223310 gttggaatctaaacaa 42223325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 11478167 - 11478051
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| |||| || ||||||||| | || |||||||||||||||||| ||||||||||  |||||||| ||||| |||  ||||||||||||||| |    
T  11478167 gtaaaccgaaattatcccaaattacaagaggcgaaagtaccttaaattttgtaatttgatgctatgaaggtccaaaaccaaagaattttcaaattacagg 11478068  T
Q  127 gttgaaatctaaacaaa 143  Q
    |||||||||||||||||    
T  11478067 gttgaaatctaaacaaa 11478051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 35791149 - 35791264
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| ||| |||||||||||||  ||| |||||||||||||||||| |||||||||| |||||||||| ||||||||  ||| || ||||||||      
T  35791149 gtaaaccgaaatactctcaaattacaaagggcgaaagtaccttaaattttgtaatttgatggcatgaaggtttaaaatcaaagaatctttaaattacaga 35791248  T
Q  127 gttgaaatctaaacaa 142  Q
    ||||||||||||||||    
T  35791249 gttgaaatctaaacaa 35791264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 11915182 - 11915288
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    ||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||| ||||| ||| |||| ||||||||| |  ||||||||     
T  11915182 aattctctcaaattacacggggcgaaagtgccttaaattttgtaatttgatgtcatgaaggtccaaaaccaaaaaatcttcaaattatagagttgaaatt 11915281  T
Q  136 taaacaa 142  Q
    |||||||    
T  11915282 taaacaa 11915288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 16590602 - 16590716
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    ||||| || ||||||||||||| | ||| || |||||||||||||||||| |||||||||||||||||||| ||||| |||  ||| ||||||||||| |    
T  16590602 gtaaatcgaaattctctcaaat-ataggaggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaaccaaataatcttcaaattacagg 16590700  T
Q  127 gttgaaatctaaacaa 142  Q
     ||||||| |||||||    
T  16590701 tttgaaatataaacaa 16590716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 41567415 - 41567314
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaaca 141  Q
    ||||||||||| | || ||||||||||||||||||  ||||||||  ||| ||| | ||||||| |  ||||||||||||||||||||||||||||||||    
T  41567415 ctcaaattacatgaggcgaaagtaccttaaattttgaaatttgataccataaagatccaaaatcgaataattttcaaattacaaggttgaaatctaaaca 41567316  T
Q  142 aa 143  Q
    ||    
T  41567315 aa 41567314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 41906206 - 41906289
Alignment:
Q  59 gaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaacaa 142  Q
    |||||||||| ||||||| |||||||||| ||| ||||| |||||| || |||| ||||||||||||||||||||| |||||||    
T  41906206 gaaagtacctaaaattttgtaatttgatgccataaaggtccaaaataaaaaaatcttcaaattacaaggttgaaatttaaacaa 41906289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 31989522 - 31989607
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaagg 127  Q
    |||| |||| |||||| ||||||||| |||||||| |||||||||| ||||||||| ||||| |||  ||| ||||||||||||||    
T  31989522 ctcatattatagggggcgaaagtaccataaattttgtaatttgatgccatgaaggtccaaaaccaaagaatcttcaaattacaagg 31989607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 31377718 - 31377803
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaagg 127  Q
    ||||||||||||| || ||||||||  |||||||| |||| ||||| ||||||||| ||||| |||  ||| ||||||||||||||    
T  31377718 ctcaaattacaggaggcgaaagtactataaattttgtaatatgatgccatgaaggtccaaaaccaaataatcttcaaattacaagg 31377803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 31397428 - 31397528
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaaca 141  Q
    ||||||||||| |||| ||||||| | ||||||||  ||||||| ||||||||||| ||||| |||  ||| ||||||||||| | ||  ||||||||||    
T  31397428 ctcaaattacaaggggcgaaagtatcataaattttgaaatttgacgtcatgaaggtccaaaaccaaataatcttcaaattacaggtttacaatctaaaca 31397527  T
Q  142 a 142  Q
    |    
T  31397528 a 31397528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 959678 - 959740
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaat 104  Q
    |||||||| || || | ||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  959678 ctcaaatttcaaggagcgaaagtaccttaaattttaaaatttaatgtcataaaggttcaaaat 959740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 15580625 - 15580673
Alignment:
Q  88 tcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatct 136  Q
    |||||||||| ||||||||| |||| ||||||||||||| |||||||||    
T  15580625 tcatgaaggtccaaaatcaaaaaatcttcaaattacaagattgaaatct 15580673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 23381341 - 23381403
Alignment:
Q  25 gagtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatg 87  Q
    ||||||| || ||||  ||||||||||| |||| ||||||||| |||||||| ||||||||||    
T  23381341 gagtaaatcgaaatttactcaaattacaaggggcgaaagtaccataaattttgtaatttgatg 23381403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 11755843 - 11755803
Alignment:
Q  86 tgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||||||||||||||||| |||| || ||||||||||    
T  11755843 tgtcatgaaggttcaaaatcaaaaaatctttaaattacaag 11755803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 39373219 - 39373255
Alignment:
Q  89 catgaaggttcaaaatcaacaaattttcaaattacaa 125  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  39373219 catgaaggttcaaaatcaaaaaatcttcaaattacaa 39373255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 13437002 - 13437118
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||  ||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||| ||||||||| ||||  |||||||||| |    
T  13437002 gtaaaccaaaattctctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaatcaaaaaatcatcaaattacacg 13437101  T
Q  127 gttgaaatctaaacaaa 143  Q
    |||| ||||||||||||    
T  13437102 gttggaatctaaacaaa 13437118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 5469477 - 5469592
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| |||||||||| |||||||||||  ||| ||||||||||||| || ||||||| ||||||||| ||||||||| |||  |||||||||||||    
T  5469477 gtaaaccgaaattctctcatattacagggggcaaaaataccttaaattttgtagtttgatgccatgaaggtccaaaatcaaaaaaaattcaaattacaag 5469576  T
Q  127 gttgaaatctaaacaa 142  Q
    |||| |||||||||||    
T  5469577 gttggaatctaaacaa 5469592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 7261487 - 7261587
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaaca 141  Q
    ||||||||||||||||  |||||||||| ||||||  ||||||||||||||||||| ||||| |||  ||| ||||||||||| ||||| ||||||||||    
T  7261487 ctcaaattacaggggggcaaagtaccttcaattttgaaatttgatgtcatgaaggtccaaaaccaaagaatgttcaaattacagggttggaatctaaaca 7261586  T
Q  142 a 142  Q
    |    
T  7261587 a 7261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 25059980 - 25059868
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| ||| ||||||||||||| |||| |||| ||||||||||||| |||||||||||| ||||||| ||||||||| |||| || |||||| | |    
T  25059980 gtaaaccgaaatgctctcaaattacaaggggcgaaaataccttaaattttgtaatttgatgtcttgaaggtccaaaatcaaaaaatatttaaattagagg 25059881  T
Q  127 gttgaaatctaaa 139  Q
     || |||||||||    
T  25059880 attaaaatctaaa 25059868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 33864206 - 33864321
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| |||||||  |||||||||| || |||| ||||||||||||| |||||||||| ||| ||||| ||||| |||  ||| ||||||||||| |    
T  33864206 gtaaaccgaaattctcgaaaattacaggaggcgaaaataccttaaattttgtaatttgatgccataaaggtccaaaaccaaagaatcttcaaattacagg 33864305  T
Q  127 gttgaaatctaaacaa 142  Q
    |||| |||||||||||    
T  33864306 gttggaatctaaacaa 33864321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 33916716 - 33916601
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| |||||||  |||||||||| || |||| ||||||||||||| |||||||||| ||| ||||| ||||| |||  ||| ||||||||||| |    
T  33916716 gtaaaccgaaattctcgaaaattacaggaggcgaaaataccttaaattttgtaatttgatgccataaaggtccaaaaccaaagaatcttcaaattacagg 33916617  T
Q  127 gttgaaatctaaacaa 142  Q
    |||| |||||||||||    
T  33916616 gttggaatctaaacaa 33916601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 5883008 - 5883087
Alignment:
Q  54 ggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaa 133  Q
    |||| ||||||||||||||||||| ||||||||||||||||||| ||||  |||  ||| || |||||||||||||||||    
T  5883008 ggggcgaaagtaccttaaattttaaaatttgatgtcatgaaggtacaaagccaaataatcttaaaattacaaggttgaaa 5883087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 15654133 - 15654057
Alignment:
Q  59 gaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    ||||||||||||| ||||  |||||||||||  ||||||||||||||||  |||||||||||||||| |||| ||||    
T  15654133 gaaagtaccttaagttttgaaatttgatgtccagaaggttcaaaatcaaagaattttcaaattacaaagttggaatc 15654057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 22315282 - 22315210
Alignment:
Q  70 aaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaacaa 142  Q
    ||||||| |||| ||||| ||||||||| ||||||||| |||| ||||||||||| ||||| |||||||||||    
T  22315282 aaattttgtaatatgatgccatgaaggtccaaaatcaaaaaatcttcaaattacagggttggaatctaaacaa 22315210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 17890246 - 17890132
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| |||||||||||||||||  ||  | |||||||||||||||| ||||||||||  |||| | | |||||| || |||| || |||||||| |    
T  17890246 gtaaaccgaaattctctcaaattacaatggacggaagtaccttaaattttgtaatttgatgctatgaggatccaaaat-aaaaaatctttaaattacagg 17890148  T
Q  127 gttgaaatctaaacaa 142  Q
    |||| |||||||||||    
T  17890147 gttggaatctaaacaa 17890132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 9240621 - 9240697
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaa 103  Q
    |||||| | ||||||||||||||||||     ||||||||||||||||| ||||||||||| |||||||||| ||||    
T  9240621 gtaaactgaaattctctcaaattacagaatacgaaagtaccttaaatttcataatttgatgccatgaaggtttaaaa 9240697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 44228429 - 44228544
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| ||||  || ||||||||||||  ||||||||||||||||||  ||||||||| || |||||| ||||  |||  ||| ||||||||||  |    
T  44228429 gtaaaccgaaatttgcttaaattacaggggc-gaaagtaccttaaattttgaaatttgatgccacgaaggtccaaacccaaagaatcttcaaattactgg 44228527  T
Q  127 gttgaaatctaaacaaa 143  Q
    |||| ||||||||||||    
T  44228528 gttgcaatctaaacaaa 44228544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 22152050 - 22151971
Alignment:
Q  45 aaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattaca 124  Q
    ||||||||| ||| | ||||||| ||||||||  ||||||||||||||||||| |||||  || |||| |||||||||||    
T  22152050 aaattacagtgggcgtaagtaccataaattttgcaatttgatgtcatgaaggtccaaaacaaaaaaatcttcaaattaca 22151971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 44078716 - 44078798
Alignment:
Q  60 aaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaacaa 142  Q
    |||||||||||||||||  ||||| |||| | |||||| |||||  ||   || ||||||||||||||||| |||||||||||    
T  44078716 aaagtaccttaaattttgaaattttatgttaggaaggtccaaaacaaaaggatcttcaaattacaaggttggaatctaaacaa 44078798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 5880548 - 5880581
Alignment:
Q  62 agtaccttaaattttataatttgatgtcatgaag 95  Q
    |||||||||||||||| |||||||||||||||||    
T  5880548 agtaccttaaattttaaaatttgatgtcatgaag 5880581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 16639654 - 16639541
Alignment:
Q  27 gtaaaccgtaattctctcaaattacag-ggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaa 125  Q
    |||||||  |||| ||||||||||||  |||| ||||||||| |||||||| ||||||||  |||| |||||  |||| |||  ||| || |||||||||    
T  16639654 gtaaaccaaaattttctcaaattacaaaggggcgaaagtaccataaattttgtaatttgacatcataaaggtcaaaaaccaaagaatctttaaattacaa 16639555  T
Q  126 ggttgaaatctaaa 139  Q
     | |||||||||||    
T  16639554 tgatgaaatctaaa 16639541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 19967820 - 19967865
Alignment:
Q  89 catgaaggttcaaaatcaacaaattttcaaattacaaggttgaaat 134  Q
    ||||||||| ||||||||| |||| |||||||||||||| ||||||    
T  19967820 catgaaggtccaaaatcaaaaaatcttcaaattacaaggatgaaat 19967865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 9235481 - 9235587
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    |||||| |||||||||| |||| |||||||||||||||||| |||||||||| ||||||||| ||||||||| |||| ||||||||||| ||||||||||    
T  9235481 aattctttcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaatcaaaaaatcttcaaattacagggttgaaatc 9235580  T
Q  136 taaacaa 142  Q
    |||||||    
T  9235581 taaacaa 9235587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 23289044 - 23289150
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    |||||||||||||||||||||  |||||||||||||||||| |||||||||| ||||||||| |||| | || |||| ||||||||||| ||||| ||||    
T  23289044 aattctctcaaattacaggggacgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaagttaaaaaatcttcaaattacagggttggaatc 23289143  T
Q  136 taaacaa 142  Q
    |||||||    
T  23289144 taaacaa 23289150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 23245676 - 23245792
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    ||||| || |||| |||||||||||| |||| ||||||||||||||||||| ||||| ||| |||  |||| ||||||||| |||| ||||||||||| |    
T  23245676 gtaaaacgaaattatctcaaattacatggggcgaaagtaccttaaattttaaaatttaatgccatataggtccaaaatcaaaaaatcttcaaattacagg 23245775  T
Q  127 gttgaaatctaaacaaa 143  Q
    ||||||||  |||||||    
T  23245776 gttgaaatagaaacaaa 23245792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 13373351 - 13373240
Alignment:
Q  31 accgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttg 130  Q
    |||| ||||||||||||||||| ||||  ||| ||||||||||||| |||||||||| || |||||||||||| |||  ||| |||||||||||  ||||    
T  13373351 accggaattctctcaaattacaaggggcaaaaataccttaaattttgtaatttgatgccaggaaggttcaaaaccaaagaatcttcaaattacagagttg 13373252  T
Q  131 aaatctaaacaa 142  Q
    |||| |||||||    
T  13373251 aaatataaacaa 13373240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 5600308 - 5600413
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    |||||||| |||||| |||||  ||||||||||| |||||| ||| |||||| ||||||| || ||||| || |||| |||||||||||||||||||||     
T  5600308 aattctctaaaattataggggc-gaaagtaccttcaattttgtaacttgatgccatgaagatttaaaataaaaaaatcttcaaattacaaggttgaaatt 5600406  T
Q  136 taaacaa 142  Q
    |||||||    
T  5600407 taaacaa 5600413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 5640312 - 5640207
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatc 135  Q
    |||||||| |||||| |||||  ||||||||||| |||||| ||| |||||| ||||||| || ||||| || |||| |||||||||||||||||||||     
T  5640312 aattctctaaaattataggggc-gaaagtaccttcaattttgtaacttgatgccatgaagatttaaaataaaaaaatcttcaaattacaaggttgaaatt 5640214  T
Q  136 taaacaa 142  Q
    |||||||    
T  5640213 taaacaa 5640207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 24375853 - 24375771
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaa 125  Q
    ||||||||||| |||  ||||||||| |||||||| |||||||||| ||||||||| ||||| ||| |||| ||||||||||||    
T  24375853 ctcaaattacaagggacgaaagtaccataaattttgtaatttgatgccatgaaggtccaaaa-caaaaaatcttcaaattacaa 24375771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 28786466 - 28786365
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaaca 141  Q
    |||||||||||||| | | |||||||||||| |||  || |||||| ||||||||| |||||||||  ||| ||| | ||||| ||||| ||||||||||    
T  28786466 ctcaaattacagggagcggaagtaccttaaagtttgaaaattgatgccatgaaggtccaaaatcaaataatcttctagttacagggttggaatctaaaca 28786367  T
Q  142 aa 143  Q
    ||    
T  28786366 aa 28786365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 11908565 - 11908468
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaa 139  Q
    |||||||||||| ||   |||||||||||||||||  ||||||||| ||||||||| | ||| ||   ||| ||||||||||| ||||| ||||||||    
T  11908565 ctcaaattacagaggacaaaagtaccttaaattttgaaatttgatgccatgaaggtcctaaaccatagaatcttcaaattacatggttggaatctaaa 11908468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 12719249 - 12719165
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaagg 127  Q
    ||||||||||| |||| ||||||| | | ||||||  ||||||||||||||||||| ||||| ||| | | |||||||||||||||    
T  12719249 ctcaaattacaaggggcgaaagtatcatcaattttgaaatttgatgtcatgaaggtccaaaaccaa-agaatttcaaattacaagg 12719165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 24528923 - 24529000
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaat 104  Q
    ||||||||  ||||||| ||||||||  ||| |||| ||| |||||||||||||||||||| || |||||| ||||||    
T  24528923 gtaaaccgagattctctaaaattacaaagggcgaaaatactttaaattttataatttgatgccacgaaggtacaaaat 24529000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 8980741 - 8980817
Alignment:
Q  63 gtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaa 139  Q
    ||||| |||||||| |||||||||||||||||||| |||||  ||  ||| |||||||||||| |  ||||||||||    
T  8980741 gtaccataaattttgtaatttgatgtcatgaaggtccaaaactaaagaatcttcaaattacaaagacgaaatctaaa 8980817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 10761678 - 10761724
Alignment:
Q  88 tcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaat 134  Q
    |||||||||| ||||||||| |||| |||||||||||||| ||||||    
T  10761678 tcatgaaggtccaaaatcaaaaaatcttcaaattacaaggatgaaat 10761724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 25653822 - 25653777
Alignment:
Q  89 catgaaggttcaaaatcaacaaattttcaaattacaaggttgaaat 134  Q
    ||||||||| ||||||||| |||| |||||||||||||| ||||||    
T  25653822 catgaaggtccaaaatcaaaaaatcttcaaattacaaggatgaaat 25653777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 26367312 - 26367388
Alignment:
Q  60 aaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatct 136  Q
    |||||||||||||||||  ||||| |  ||| ||||||||||||  ||  |||||| |||||||| |||||||||||    
T  26367312 aaagtaccttaaattttgaaatttaaaatcaagaaggttcaaaactaaagaattttaaaattacagggttgaaatct 26367388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 28999426 - 28999390
Alignment:
Q  68 ttaaattttataatttgatgtcatgaaggttcaaaat 104  Q
    |||||||||  ||||||||||||||||||||||||||    
T  28999426 ttaaattttgaaatttgatgtcatgaaggttcaaaat 28999390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 9662871 - 9662968
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattaca 124  Q
    |||||| | ||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||    
T  9662871 gtaaactgaaattctctcaaattacagggggcaaaagtaccttaaattttgtaatttgatgtcatgaaggttcaaaatcaaaaaatcttcaaattaca 9662968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 9044584 - 9044699
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||  |||||||||||||||| || |||||||||| |||||||| |||||||||||| ||||||||| |||||||||  ||| |||||||||||||    
T  9044584 gtaaaccaaaattctctcaaattacgggaggtgaaagtatcttaaattatataatttgatgccatgaaggtccaaaatcaaataatcttcaaattacaag 9044683  T
Q  127 gttgaaatctaaacaa 142  Q
    |||| ||| |||||||    
T  9044684 gttggaatttaaacaa 9044699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 3816666 - 3816551
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||  |||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||  ||| || ||||||  ||    
T  3816666 gtaaaccaaaattttctcaaattacagggggcgaaagtaccttaaattttataatttgatgccatgaagattcaaaaccaaagaatctttaaatta-tag 3816568  T
Q  127 gttgaaatctaaacaaa 143  Q
    |||| ||||||||||||    
T  3816567 gttggaatctaaacaaa 3816551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 25167038 - 25167150
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| ||||||||||||||||| |||  |||||||||||||||||| |||||||||| ||||||| | |||||||||  ||| |||||||||||      
T  25167038 gtaaaccgaaattctctcaaattacaagggacgaaagtaccttaaattttgtaatttgatgccatgaagatccaaaatcaaataatcttcaaattacaca 25167137  T
Q  127 gttgaaatctaaa 139  Q
    |||| ||||||||    
T  25167138 gttggaatctaaa 25167150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 335031 - 334912
Alignment:
Q  23 atgagtaaaccgtaattctctcaaattacaggggg-tgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaatt 121  Q
    ||||||||||   |||||||| |||||||| |||  ||||||||| |||||||||||||||| |||||||||| || | ||| | | |||| ||||||||    
T  335031 atgagtaaactaaaattctcttaaattacaagggaatgaaagtactttaaattttataatttaatgtcatgaatgtcctaaa-ctaaaaatcttcaaatt 334933  T
Q  122 acaaggttgaaatctaaacaa 142  Q
    |||||||| ||||||||||||    
T  334932 acaaggttaaaatctaaacaa 334912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 6759824 - 6759772
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaa 94  Q
    ||||||||| |||||||||||||||||||||||||  |||||||| |||||||    
T  6759824 ctcaaattaaagggggtgaaagtaccttaaattttgaaatttgatctcatgaa 6759772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 20757608 - 20757684
Alignment:
Q  45 aaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaatt 121  Q
    |||||||| |||| ||||||||||||| |||| ||||||||||||||||| |  ||||| ||| |||| ||||||||    
T  20757608 aaattacaaggggcgaaagtaccttaagttttgtaatttgatgtcatgaacgaccaaaaccaaaaaatcttcaaatt 20757684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 33198686 - 33198591
Alignment:
Q  43 tcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaa 139  Q
    |||||||||||| | ||||||| ||||||||||| |||||||||| |||||| ||  |||| |||  ||| ||||||||| | || || ||||||||    
T  33198686 tcaaattacaggtg-tgaaagtgccttaaattttgtaatttgatgccatgaatgtctaaaaccaaagaatcttcaaattatagggatggaatctaaa 33198591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 82332 - 82444
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||| |||||||||| |||||||||  ||| || |||||| | |    
T  82332 gtaaaccgaaattctctcaaattacatggggcgaaagtaccttaaattttgtaatttgatatcatgaaggtccaaaatcaaacaatctttaaattaaagg 82431  T
Q  127 gttgaaatctaaa 139  Q
    |||||||||||||    
T  82432 gttgaaatctaaa 82444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 13286 - 13385
Alignment:
Q  45 aaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatc-aacaaattttcaaattacaaggttgaaatctaaacaaa 143  Q
    |||||||| |||| |||||||||||||||||| |||||||||||||||||||| ||||||| || |||| ||||||||||||||||| ||||||||||||    
T  13286 aaattacatggggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacaaggttggaatctaaacaaa 13385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 25865 - 25976
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||||||| ||||||||| |||  ||||||||| | |    
T  25865 gtaaaccgaaattctctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaatcaaaaaaccttcaaatta-agg 25963  T
Q  127 gttgaaatctaaa 139  Q
    |||| ||||||||    
T  25964 gttggaatctaaa 25976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 13153714 - 13153598
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| ||||||||||||||||| |||  ||||||||| |||||||| || |||||||  |||||||| |||||| || |||| |||||||||||||    
T  13153714 gtaaaccgaaattctctcaaattacaagggacgaaagtaccgtaaattttgtattttgatgctatgaaggtccaaaataaagaaatcttcaaattacaag 13153615  T
Q  127 gttgaaatctaaacaaa 143  Q
    |||| ||||||||||||    
T  13153614 gttggaatctaaacaaa 13153598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 17668735 - 17668851
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||||||| | |||||| ||||||| || |||||||||  ||| || |||||||||     
T  17668735 gtaaaccaaaattctctcaaattacagggggcgaaagtaccttaaattttaaattttgatatcatgaaagtccaaaatcaaagaatctttaaattacaat 17668834  T
Q  127 gttgaaatctaaacaaa 143  Q
    |||||||||| ||||||    
T  17668835 gttgaaatcttaacaaa 17668851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 21144138 - 21144023
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||  ||||||||||||||||| ||||  ||||||| | ||||||| |||||||||| ||||||||| ||||||||| |||| ||||||||||| |    
T  21144138 gtaaaccaaaattctctcaaattacaaggggcaaaagtacatcaaattttgtaatttgatgccatgaaggtccaaaatcaaaaaatcttcaaattacagg 21144039  T
Q  127 gttgaaatctaaacaa 142  Q
    |||| |||||||||||    
T  21144038 gttggaatctaaacaa 21144023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 37869504 - 37869611
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggtt-gaaat 134  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||| ||||||||| |||||||||  ||| |||||||||||||||| |||||    
T  37869504 aattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaat 37869603  T
Q  135 ctaaacaa 142  Q
    ||||||||    
T  37869604 ctaaacaa 37869611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 20355199 - 20355314
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaag 126  Q
    |||||||| |||||  |||||||||| ||||  | ||||||||||||||| |||||||||| ||| ||||||||||||||| |||| ||||||||||| |    
T  20355199 gtaaaccgaaattccttcaaattacaaggggcaagagtaccttaaattttttaatttgatgccatcaaggttcaaaatcaaaaaatcttcaaattacagg 20355298  T
Q  127 gttgaaatctaaacaa 142  Q
     ||| |||||||||||    
T  20355299 attggaatctaaacaa 20355314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 15399793 - 15399675
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaat--caacaaattttcaaattaca 124  Q
    ||||| || |||| |||||||||||| |||| |||||||||||||||||| ||||||||||| |||||||| ||||||   || |||| |||||||||||    
T  15399793 gtaaatcgaaattatctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgttatgaaggtccaaaataaaaaaaaatcttcaaattaca 15399694  T
Q  125 aggttgaaatctaaacaaa 143  Q
     |||||  |||||||||||    
T  15399693 gggttgggatctaaacaaa 15399675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 42778989 - 42779064
Alignment:
Q  28 taaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaat 104  Q
    ||||||| ||||||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||| ||||||    
T  42778989 taaaccgaaattctctcaaattacaagggc-gaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaat 42779064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 20628110 - 20628040
Alignment:
Q  55 gggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaa 125  Q
    ||||||||||||| |||||||| |||||||||| || |||||| ||||| |||  ||||||||||||||||    
T  20628110 gggtgaaagtaccataaattttgtaatttgatgccaagaaggtccaaaaccaaagaattttcaaattacaa 20628040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 31567804 - 31567882
Alignment:
Q  46 aattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattaca 124  Q
    ||||||||| || ||||||||  |||||||| ||||||||| |||||||||| ||||| ||| |||| |||||||||||    
T  31567804 aattacaggaggcgaaagtactataaattttgtaatttgatatcatgaaggtccaaaaccaaaaaatcttcaaattaca 31567882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 17190850 - 17190902
Alignment:
Q  36 aattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgt 88  Q
    ||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||    
T  17190850 aattcgctctaattacaaggggtgaaagtaccttaaattttaaaatttgatgt 17190902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 38083002 - 38082925
Alignment:
Q  65 accttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaacaa 142  Q
    |||||||||||  ||||||||||  ||| ||||||||||||||  ||| ||||||| ||   ||||||||||||||||    
T  38083002 accttaaatttcgtaatttgatgctatgtaggttcaaaatcaaagaatcttcaaataactgtgttgaaatctaaacaa 38082925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 31567747 - 31567696
Alignment:
Q  91 tgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaacaaa 143  Q
    ||||||| ||||| ||| |||| |||||||||||||| |||||||||||||||    
T  31567747 tgaaggtccaaaaccaa-aaatcttcaaattacaaggatgaaatctaaacaaa 31567696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 306678 - 306762
Alignment:
Q  42 ctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaagg 127  Q
    |||||||||||||||  ||||||||| |||||||| |||||||||| ||||||||| ||||| |||  ||| ||||||||||||||    
T  306678 ctcaaattacaggggc-gaaagtaccataaattttgtaatttgatgccatgaaggtccaaaaccaaagaatcttcaaattacaagg 306762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 316627 - 316699
Alignment:
Q  68 ttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaac 140  Q
    |||||||| | ||||||||||||||||| |  |||||||| ||| ||||| |||| | ||||| |||||||||    
T  316627 ttaaatttcaaaatttgatgtcatgaagatctaaaatcaaaaaaatttcatattagagggttggaatctaaac 316699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 23287 - 23194
Alignment:
Q  28 taaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatttgatgtcatgaaggttcaaaatcaacaaattttcaaatt 121  Q
    ||||||| ||||||||||||||| || ||| | || ||| ||||||||| |||||||||| |||||||||  |||||||| || | ||||||||    
T  23287 taaaccgaaattctctcaaattatagagggcggaaatacgttaaattttgtaatttgatgccatgaaggtctaaaatcaaaaagtcttcaaatt 23194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 34564 - 34499
Alignment:
Q  78 taatttgatgtcatgaaggttcaaaatcaacaaattttcaaattacaaggttgaaatctaaacaaa 143  Q
    |||||||||| ||||||||| ||| ||||| |||| || |||||||||||||| ||| ||||||||    
T  34564 taatttgatgccatgaaggtccaagatcaaaaaatcttaaaattacaaggttggaatttaaacaaa 34499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 34939 - 34884
Alignment:
Q  27 gtaaaccgtaattctctcaaattacagggggtgaaagtaccttaaattttataatt 82  Q
    |||||||  ||| ||||||||||||| |||| |||||||||||||||||| |||||    
T  34939 gtaaaccaaaatactctcaaattacatggggagaaagtaccttaaattttttaatt 34884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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