View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3870_low_11 (Length: 262)
Name: NF3870_low_11
Description: NF3870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3870_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 2151709 - 2151458
Alignment:
| Q |
1 |
caaacatatttatcatgagagacaaagaattttggtcaaggatctcaatgattgtccaccaagaaggttcattcaaaacatagacat------cgacgat |
94 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2151709 |
caaacatatttaccgtgagagacaaagaattttggtcaaggatctcaatgattgtccaccaagaaggttcattcaaaacatagacatagacatcgacgat |
2151610 |
T |
|
| Q |
95 |
gattcacctttccaattggacaagtcttatgaaaatgatcattatgaaaacgtaatatttctcaattgtaccaacaatgttgaaaaggaaccatttgatg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151609 |
gattcacctttccaattggacaagtcttatgaaaatgaccattatgaaaacgtaatatttctcaattgtaccaacaatgttgaaaaggaaccatttgatg |
2151510 |
T |
|
| Q |
195 |
atcttcctaatataccttgtctaagcagtggcagttatacgattgtgtatac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151509 |
atcttcctaatataccttgtctaagcagtggcagttatacgattgtgtatac |
2151458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 2146259 - 2146076
Alignment:
| Q |
41 |
gatctcaatgattgtccaccaagaaggttcattcaaaacatagacatcgacgatgattcacctttccaattggacaagtcttatgaaaatgatcattatg |
140 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||| ||||||| ||||| |||| | | | |||||||| |
|
|
| T |
2146259 |
gatcccaatgattgtccaccaagaaggttccttcaaaacatagacctcaacgatgattcacttttccaacgggacagactttatcatagtactcattatg |
2146160 |
T |
|
| Q |
141 |
aaaacgtaatatttctcaattgtaccaacaatgttgaaaaggaacca---tttgatgatcttcc---taatataccttgtctaagca |
221 |
Q |
| |
|
||||||||| ||||||||||||||| || || || |||||||||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
2146159 |
aaaacgtaacatttctcaattgtactaaaaa---tgcaaaggaaccaatgtttgatcatcttcctaataatataccttgtctaagca |
2146076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 2142036 - 2141947
Alignment:
| Q |
135 |
attatgaaaacgtaatatttctcaattgtaccaacaatgttgaaaaggaacca---tttgatgatcttcctaatataccttgtctaagca |
221 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | |||| ||| ||| | |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2142036 |
attatgaaaacgtaacatttctcaactgtactaccaattttgcaaacggaccaatgtttgatgatcttcctaatataccttgtctaagca |
2141947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University