View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3870_low_15 (Length: 210)
Name: NF3870_low_15
Description: NF3870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3870_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 45719290 - 45719436
Alignment:
| Q |
17 |
cataggtagcaacaaaattgaagaaaagaacagaacaacccaagaacgctgtaaataaacacccaacatgtggtattgtcttgcgccgtaagcttggcca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45719290 |
cataggtagcaacaaaattgaagaaaagaacagaacaacccaagaacgctgtaaataaacacccaacatgtggtattgtcttgcgccgtaagcttggcca |
45719389 |
T |
|
| Q |
117 |
caaagggtctcaagagcactcgccattccaagctacagaataaataa |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45719390 |
caaagggtctcaagagcactcgccattccaagctacagaataaataa |
45719436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University