View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3870_low_3 (Length: 577)
Name: NF3870_low_3
Description: NF3870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3870_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 8269609 - 8269329
Alignment:
| Q |
18 |
agtttgagttacattagtgtggaactcacaaaatgctcttggtaaatgttgaattcttccaaggacctgtaaatgttgaactcacagtgtaaaccatgct |
117 |
Q |
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| T |
8269609 |
agtttgagttacattagtgtggaactcacaaaatgctcttggtaaatgttgaattcttccaaggacctgtaaatgttgaactcacagtgtaaaccatgct |
8269510 |
T |
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| Q |
118 |
tttgaggttcattgaatgggtttgaacgttaatatagtaatactactagttaatgatttatgtactgagattttatttagcattatcaacattagagttg |
217 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8269509 |
ttcgaggttcattgaatgggtttgaacgttaatattgtaatactactagttaataatttatgtactgagattttatttagcattatcaacattagagttg |
8269410 |
T |
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| Q |
218 |
gagctaatatagaaaagatggtgaaaaataggtttaaatgatttaatcatgatggaagtagattctctagcaaggagattt |
298 |
Q |
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| T |
8269409 |
gagctaatatagaaaagatggtgaaaaataagcttaactgatctaatcatgatggaagtagattctctagcaaggagattt |
8269329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 8269217 - 8269066
Alignment:
| Q |
410 |
tatcaaagaatattgcgatgaaatttaattcatataaccaacacacttaacaaaacaagatttgatttttattgtggtcgtctagtttatactttatagt |
509 |
Q |
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|||||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8269217 |
tatcaaagaatattacgatgaaatttaatttatgtaaccaacacacttagcaaaacaagatttgatttttattgtggtcgtctagtttatactttatagt |
8269118 |
T |
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| Q |
510 |
atggaatatctttgtaaagatcacccctaaaactttcatatcacggccacag |
561 |
Q |
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| T |
8269117 |
atggaatatctttgtaaagatcacccctaaaactttcatatcacggccacag |
8269066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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