View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3871_high_3 (Length: 417)
Name: NF3871_high_3
Description: NF3871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3871_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 32227680 - 32227283
Alignment:
| Q |
1 |
tttaacatcaaacgatctatactgaaacattcaagataatttatgtagatgttatccaccaaaaattataaacaatacatcgtagagcagtcccaacctt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32227680 |
tttaacatcaaacgatctatactggaacattcaagataatttatgtagatgttatccaccaaaaattataaacaatacatcgtagagcagtcccaacctt |
32227581 |
T |
|
| Q |
101 |
agttcaagagagaggaacacaaaaacatgtccactgactactcttttattctacacaattcctcccattgtcatgacaaccacaaaaagaacnnnnnnnc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32227580 |
-gttcaagagagaggaacacaaaaacatgtccactgactactcttttattctacacaattcctcccattgtcatgacaaccacaaaaagaacaaaaaaac |
32227482 |
T |
|
| Q |
201 |
acactttcatctttctcagtaccaaaatggaggaacccaccttcctagtaaccatgttagtgcccttcatatgtagaaatgacctcaatagaagtcatca |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32227481 |
acactttcatctttcttagtaccaaaatggaggaacccaccttcctagtaaccatgttagtgcccttcatatgtagaaatgacctcaatagaagtcatca |
32227382 |
T |
|
| Q |
301 |
agtgacagattctcaacagagccaaatgtttcaactgatccaattcttgagtagtttgtcattgatccacccaaaaaatcaagtggtgaatcatttgag |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32227381 |
agtgacagattctcaacagagccaaatgtttcaactgatccaattcttgagtagtttgtcattgatccacccaaaaaatcaagtggtgaatcatttgag |
32227283 |
T |
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