View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3871_high_5 (Length: 340)
Name: NF3871_high_5
Description: NF3871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3871_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 3100418 - 3100096
Alignment:
| Q |
1 |
aatataataatttaaaattgtttatttgaataaatatattttacagatagggtaaaattttttaatctcacattatatgcaaatattaaaatctaacaaa |
100 |
Q |
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| T |
3100418 |
aatataataatttaaaattgtttatttgaataaatatattttacagatagggtaaaactttttaatctcatattatatgcaaatattaaaatctaacaaa |
3100319 |
T |
|
| Q |
101 |
tgattataggttcatgaaaacttaccactaaatgaggaaggaaccagaacaacatgcaaatcaatattgttaggaggtagatgcaaaagaagggggtaaa |
200 |
Q |
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| T |
3100318 |
tgattataggttcatgaaaacttaccactaaatgaggaaggaaccagaacaacatgcaagtcaatattgctaggaggtagatgcaaaagaagggggtaaa |
3100219 |
T |
|
| Q |
201 |
gtttagcattcaatggattgcgacaacacacaagaatatcaacaagtccactttcctccatcaatttctccttcaactcttctacactacttcctttaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3100218 |
gtttagcattcaatggattgcgacaacacacaagaatatcaacaagtccagtttcctccaacaatttctccttcaactcttctacactacttcctttaaa |
3100119 |
T |
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| Q |
301 |
ggtaaataatgaccctttatttg |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
3100118 |
ggtaaataatgaccctttatttg |
3100096 |
T |
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