View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3871_low_11 (Length: 236)
Name: NF3871_low_11
Description: NF3871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3871_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 27650413 - 27650244
Alignment:
| Q |
18 |
atttcaatgaaggataattactaataaccaagaatatgcttaaaaagaaccaagtggatttcaaattgttaattatattcgatcacaaaatactttaatc |
117 |
Q |
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| T |
27650413 |
atttcaatgaaagataattactaataactaagaatatgcttaaaaagaaccgagttgatttcaaattgttaattatattcgatcacaaaatactttaatc |
27650314 |
T |
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| Q |
118 |
aagttttcgagtatggtagataatttgaagaaacttgtcaagtgtattggatttccaaaaaatttgatgg |
187 |
Q |
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| T |
27650313 |
aagttttccagtatggtagataatttgaagaaacttgtcaagtgtattggattttcaaaaaacttgatgg |
27650244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 44302660 - 44302569
Alignment:
| Q |
24 |
atgaaggataattactaataaccaagaatatgcttaaaaagaaccaagtggatttcaaattgttaattatattcgatcacaaaatactttaa |
115 |
Q |
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| T |
44302660 |
atgaagaataactaataataatcatgaatatgcttaaaaagaatcaagttgatttcgtattgttaattctatttgataaaaaaatactttaa |
44302569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 41361994 - 41361803
Alignment:
| Q |
20 |
ttcaatgaaggataattact--aataaccaagaatatgcttaaaaagaaccaagtggatttcaaattgttaattatattcgatcacaaaatactttaatc |
117 |
Q |
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| T |
41361994 |
ttcaatgaaggataatcaattcaataaccaagaatatgcttaaaaagaaccaagttgatttcagattgttaagtctatttaatta-aaaatacttga-tc |
41361897 |
T |
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| Q |
118 |
aagttttcgagtatggtagataatttgaagaaacttgtcaagtgtattggatttccaaaaaatttgatggattttcaaaaaactttatggggtg |
211 |
Q |
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| T |
41361896 |
aaattttccggtatggtagataatttgaagaaacttgtcaagtgtattggattttcataaaaattgatagattttcaaaaaacttgatggggtg |
41361803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 46143352 - 46143218
Alignment:
| Q |
39 |
taataaccaagaatatgcttaaaaagaaccaagtggatttcaaattgttaattatattcgatcacaaaatactttaatcaagttttcgagtatggtagat |
138 |
Q |
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| T |
46143352 |
taatgaccaataatattcttaaaaagaactaagttgatttcggattgttaattttgtttgattacaaaatactttaatcatgttttttggtatgatagat |
46143253 |
T |
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| Q |
139 |
aatttgaagaaacttgtcaagtgtattggatttcc |
173 |
Q |
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| T |
46143252 |
aattttaagaaacttgtcaattatattggatttcc |
46143218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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