View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3871_low_2 (Length: 508)
Name: NF3871_low_2
Description: NF3871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3871_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 16 - 490
Target Start/End: Complemental strand, 8358588 - 8358109
Alignment:
| Q |
16 |
caagcaacgtgtgaaaatcacgcccgtgaattatttatttcctctataatattactcgtaagcaatataattgagtttaaaatatgtctctcatattttc |
115 |
Q |
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| T |
8358588 |
caagcaacgtgtgaaaatcacgtccgtgaattatttatttcctctataatattacttgtaagcaatataattgagtttaaaatatgtctctcatattttc |
8358489 |
T |
|
| Q |
116 |
ttttctaaattaatataatataat-----taatgttgtgatctctctgtaatttgttgcagaacaagtctcctagatttgttaacggtgagaaagcacaa |
210 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8358488 |
ttttctaaattaatataatataatataattaatgttgtgatctctctgtaatttgttgcagaacaagtctcctagatttgttaacggtgagaaagcacaa |
8358389 |
T |
|
| Q |
211 |
gtaaacatgttcttcaagttcttccaactcatccaaaaagctagactcttgatcactaaattcactcataaacctcttcaatatttcacatttactacca |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8358388 |
gtaaacatgttcttcaagttcttccaactcatccaaaaatcttgactcttgatcactaaattcactcataaacctcttcaatatttcacatttactacca |
8358289 |
T |
|
| Q |
311 |
acattcttcacacaaacttgagcaaccatttttctatgttccacctcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaata |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8358288 |
acattcttcacacaaacttgagcaaccatttttctatgttccacctcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaata |
8358189 |
T |
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| Q |
411 |
taaaaacccctttcgcagcagcatcaagttgttcacatagtctttcccaattagttctattttttattctctttatgaac |
490 |
Q |
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| T |
8358188 |
taaaaacccctttcgcagcagcatcaagttgttcacatagtctttcgcaattagttctattttttattctctttatgaac |
8358109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 153 - 461
Target Start/End: Original strand, 28593124 - 28593435
Alignment:
| Q |
153 |
tctctgtaatttgttgcagaacaagtctcctagatttgttaacggtgagaaagcacaagtaaacatgttcttcaagttcttccaactcatccaaaaagct |
252 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| || | ||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
28593124 |
tctctgtaatttgttgcataacaagtctcctagatttattgatggtaagaaagcacaagtaaacatgttcttcaagctcttccaactgatccaaaaagct |
28593223 |
T |
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| Q |
253 |
agactcttgatcactaaattcactcataaacctcttcaatatttcacatttactaccaac---attcttcacacaaacttgagcaaccatttttctatgt |
349 |
Q |
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|||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||| ||||| |
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| T |
28593224 |
agactcttgatctcgatattcactcataaccctcttcaatatttcacatttactaccaacattattcttcacacaaacatcagcaaaaattttcctatgc |
28593323 |
T |
|
| Q |
350 |
tccacctcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaagttgttcacata |
449 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28593324 |
tccacttcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaaccccttttgcagcagcatcaagttgttcacata |
28593423 |
T |
|
| Q |
450 |
gtctttcccaat |
461 |
Q |
| |
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||||||| |||| |
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| T |
28593424 |
gtctttcacaat |
28593435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 365 - 456
Target Start/End: Complemental strand, 53447805 - 53447714
Alignment:
| Q |
365 |
aacctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaagttgttcacatagtctttc |
456 |
Q |
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|||||||| ||||| | ||||||||||||||||||||||||| |||| |||||||||| |||||| |||||| ||||||| ||||| |||| |
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| T |
53447805 |
aacctcttaaccatacggctcatagtatccaaatcatttatcactatataaaccccttttgcagcaacatcaatttgttcatatagtttttc |
53447714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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