View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3871_low_4 (Length: 379)
Name: NF3871_low_4
Description: NF3871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3871_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 35034389 - 35034745
Alignment:
| Q |
15 |
aatagctacaaagtttcttatcattatctaaaagttgtccatttacataaaaggttttagtatcattgtatcatgaatcatatatatgaatatgttttga |
114 |
Q |
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| T |
35034389 |
aatagctacaaagtttcttatcattatctaaacattgtccatttacataaa-ggttttagtatcattgtatcatgcatcatatatatgaatatgttttga |
35034487 |
T |
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| Q |
115 |
ttcctaattatttaatattgtgtgaattgtagggggtattacaaatgttcaacacacaattgtaacattaaaaaacaagtggaaagggatgctaaagatc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35034488 |
ttcctaattatttaatattgtgtgaattgtagggggtactacaaatgttcaacacacaattgtaacattaaaaaacaagtggaaagggatgctaaagatc |
35034587 |
T |
|
| Q |
215 |
caaaatatgtacttgttacatatgatggaaaacatacacatggacctgtcgttgataagaaaa---gaccaacatactcgagaaatactaatgcagctgg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35034588 |
caaaatatgtacttgttacatatgatggaaaacatacccatggacctgtcattgataagaaaagtcgaccaacatactcgagaaatactaatgcagctgg |
35034687 |
T |
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| Q |
312 |
agtgcgtagaaatgtcagcatgccgccaccaccatcaccaccatctgcattgcctatg |
369 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35034688 |
agtgcgtagaaatgccagcatgccgccaccaccatcaccaccatctgcattgcctatg |
35034745 |
T |
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