View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3871_low_6 (Length: 325)
Name: NF3871_low_6
Description: NF3871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3871_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 15849870 - 15850153
Alignment:
| Q |
14 |
aaccccagaattttgcaatgcatgtaaacacttgtaacnnnnnnnactcatttccttcaacctgcaaattttacaatagagaattaaacaatagattgac |
113 |
Q |
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| T |
15849870 |
aaccccagaatttttcaatgcaagtaaacacttgtaactttttttactcatttccttcaacctgcaaattttacaatagagaattaaacaatagattaac |
15849969 |
T |
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| Q |
114 |
acaagtaaccaatctgaagaa---aaacaccatcttttgtccaacttctacctgtctttgcaattcttcaaggagaaatttttacgtttgattaattttt |
210 |
Q |
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| T |
15849970 |
acaagtaaccaatctgaagaagaaaaaaaacaacttttgtccaacttctacctgtctttacaattcttcaaggagaagttttttcgtttaattagttttt |
15850069 |
T |
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| Q |
211 |
ctgctagtgacttattctctcccacttcattagcagaaatttccaactccacaactttatctctcagtcttttctggtaaggag |
294 |
Q |
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| T |
15850070 |
ctgatagtgacttattttctcccacttgattagcagaactttccgactccacaatttcatctatcagtctattctggtaaggag |
15850153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 61 - 292
Target Start/End: Complemental strand, 47438456 - 47438226
Alignment:
| Q |
61 |
tcatttccttcaacctgcaaattttacaatagagaattaaacaatagattgacacaagtaaccaatctgaagaaaaacaccatcttttgtccaacttcta |
160 |
Q |
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| T |
47438456 |
tcatttccttcaacctgcaaattttacaatagagaattaaacaatatattcgcaaaagtaaccaatctgaag-aaaacatcatcttgtgcccatcttcta |
47438358 |
T |
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| Q |
161 |
cctgtctttgcaattcttcaaggagaaatttttacgtttgattaatttttctgctagtgacttattctctcccacttcattagcagaaatttccaactcc |
260 |
Q |
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| T |
47438357 |
cctctctttacacttcgttaaggagaactttttttgctttatttcgctttctgcttgtgacttattctgtctcgcttgattagcagaatcatccaactcc |
47438258 |
T |
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| Q |
261 |
acaactttatctctcagtcttttctggtaagg |
292 |
Q |
| |
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| || | ||||||||||| | ||||||||| |
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| T |
47438257 |
aaaattccctctctcagtctatgctggtaagg |
47438226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 61 - 291
Target Start/End: Complemental strand, 10699700 - 10699471
Alignment:
| Q |
61 |
tcatttccttcaacctgcaaattttacaatagagaattaaacaatagattgacacaagtaaccaatctgaagaaaaacaccatcttttgtccaacttcta |
160 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| | | | ||||| |||||||||| |
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| T |
10699700 |
tcatttccatcaacctgcaaattttacaatagagaattaaacaatatattcacacaagtaagcaatctgaagaaaacctct-tattttgcccaacttcta |
10699602 |
T |
|
| Q |
161 |
cctgtctttgcaattcttcaaggagaaatttttacgtttgattaatttttctgctagtgacttattctctcccacttcattagcagaaatttccaactcc |
260 |
Q |
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||| ||||| || || | |||||||| |||||| | || ||| |||||||| |||||||||||| || | ||| ||||||||| ||||||||| |
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| T |
10699601 |
cctctctttacacttaattaaggagaactttttatgctttatttcgctttctgcttgtgacttattctgtctcgcttggttagcagaataatccaactcc |
10699502 |
T |
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| Q |
261 |
acaactttatctctcagtcttttctggtaag |
291 |
Q |
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|||| | ||||||||||| | |||||||| |
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| T |
10699501 |
acaattccctctctcagtctatgctggtaag |
10699471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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