View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3871_low_7 (Length: 313)
Name: NF3871_low_7
Description: NF3871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3871_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 827747 - 828040
Alignment:
| Q |
2 |
aagagtgcctttgatattgagcttttagaatctatgtctcaaagagtttacacatgcatttctgatgactcgggtatccctaaaggtcctcatgcatgat |
101 |
Q |
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| T |
827747 |
aagagtgcctttgattttgagcttttagaatctatgtctcaaagagtttacacatgcatttctgatgactcgggtatccctaaaggtcctcatgcatgat |
827846 |
T |
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| Q |
102 |
aaagtggcaaggtcagccacttgccctgtttgcaaagcaagtatataatctacaattcattgcttatttacatgttctcgagctaaagctatcttgcata |
201 |
Q |
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| T |
827847 |
aaagtggcaaggtcagccacttgtcctgtttgcaaagcaagtatataatctacaattcattgcttatttacatgttctcgagctaaagctatcttgcata |
827946 |
T |
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| Q |
202 |
cgtgtggttttggactttagtccttcccattgataagactaatttctttcaattgccacagcaaagcaactcgtggaattttaattccttgtag |
295 |
Q |
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| T |
827947 |
cgtgtggttttggactttagtccttcccattgataagactaatttctttcaattgccacagcaaagcaactcgtggaattttaattccttgtag |
828040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 4 - 293
Target Start/End: Original strand, 834443 - 834733
Alignment:
| Q |
4 |
gagtgcctttgatattgagcttttagaatctatgtctcaaagagtttacacatgcatttctgatga------ctcgggtatccctaaaggtcctcatgca |
97 |
Q |
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| T |
834443 |
gagtgcctttgattttgagcttttaaagtctctgtctcaaagggtttacacatgcattcctgattatgttatcttgggtatccctaaatgtccttatt-- |
834540 |
T |
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| Q |
98 |
tgataaagtggcaaggtcagccacttgccctgtttgcaaagcaagtatataatctacaattcattgcttatt----tacatgttctcgagctaaagctat |
193 |
Q |
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| T |
834541 |
----------gcaaggtcagccacttgtcctgtttgcaaagcaaatatataatctacaattcattgtttatttacatacatgttctcgagctaaagctat |
834630 |
T |
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| Q |
194 |
cttgcatacgtgtggttttggactttagtccttcccattgataagactaatttctttcaattgccacagcaaa----gcaactcgtggaattttaattcc |
289 |
Q |
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| T |
834631 |
ctggcatacgtgtagttgtagacttt-ggccttcccatctataagactaatttctttcgattggcacagcaaatgtggcaactcgtggaattttaattcc |
834729 |
T |
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