View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3871_low_9 (Length: 263)
Name: NF3871_low_9
Description: NF3871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3871_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 51 - 248
Target Start/End: Complemental strand, 35034178 - 35033981
Alignment:
| Q |
51 |
tacacatacttgcattgacacatataaaataggtaaatagttacctaggattgttaggatttcctttgatctctttgcatccgtacttgcgccaacaata |
150 |
Q |
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| T |
35034178 |
tacacatacttgcattgacacatataaaataggtaaatagttacctaggattgttaggatttcctttgatctctttgcatccgtacttgcgccaacaata |
35034079 |
T |
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| Q |
151 |
accatcatccaaaatgtcttcatcgctttcaactcggatcactattttttgcccgacatctgtcatggggcaaggtggtttatagcattcagagaagt |
248 |
Q |
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| T |
35034078 |
accatcatccaaaatgtcttcatcgctttcaactcggatcactattttttgcccggcatctgtcatggggcaaggtgttttatagcattcagagaagt |
35033981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 248
Target Start/End: Complemental strand, 32571517 - 32571308
Alignment:
| Q |
39 |
catttatcaatatacacatacttgcattgacacatataaaataggtaaatagttacctaggattgttaggatttcctttgatctctttgcatccgtactt |
138 |
Q |
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| T |
32571517 |
catttataaatatacatatacttgcattggcaccagggaaaaaggtaaataattacctagggtaattagcatttcctttgatctccttgcgtccatactt |
32571418 |
T |
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| Q |
139 |
gcgccaacaataaccatcatccaaaatgtcttcatcgctttcaactcggatcactattttttgcccgacatctgtcatggggcaaggtggtttatagcat |
238 |
Q |
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| T |
32571417 |
atgccagcgataaccatcattcactttgtcttcattgatttcaattctgaacactacttttggtgcaacatttatcatggtgcaagggagtttatagtgt |
32571318 |
T |
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| Q |
239 |
tcagagaagt |
248 |
Q |
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| T |
32571317 |
tcagagaagt |
32571308 |
T |
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