View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_high_14 (Length: 370)
Name: NF3872_high_14
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_high_14 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 187 - 370
Target Start/End: Original strand, 7639305 - 7639488
Alignment:
| Q |
187 |
aatattctcttgagatttggtcaaaattgtttttgtataagatgatttcaattgacaatgttgccttaataatctgtctgttttttcattggatacttct |
286 |
Q |
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| T |
7639305 |
aatattctcttgagatttggtcaaaattgtttttgtataggatgatttcaattgacaatgttgccttaataatctgtatgttttttcattggatacttct |
7639404 |
T |
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| Q |
287 |
ttatatcacaataatcaaactatttatgtttgttgtactagtgtcttaagttttcagaggatactattcatcttcttccttcat |
370 |
Q |
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| T |
7639405 |
ttatatcacaataatcaaactatttatgtttgttgtactagtgtcttaagttttcagaggatactattcagcttcttccttcat |
7639488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 7639136 - 7639248
Alignment:
| Q |
18 |
tgatgcatatatacatcttgggtgttttaatccaaaagaaacacaagtttcaggtcaacgtgcaattgagctattgagtggacttagtagtgtaaaatct |
117 |
Q |
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| T |
7639136 |
tgatgcatatatacatcttgggtgttttaatccaaaagaaacacaagtttcaggtcaacgtgcaattgagctattgagtggacttagtagtgtaaaatct |
7639235 |
T |
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| Q |
118 |
ctcaaattatcag |
130 |
Q |
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| T |
7639236 |
ctcaaattatcag |
7639248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 14728671 - 14728628
Alignment:
| Q |
78 |
tgcaattgagctattgagtggacttagtagtgtaaaatctctca |
121 |
Q |
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| T |
14728671 |
tgcaattgagctattgagtcgacttggtagtgtcaaatctctca |
14728628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 7632491 - 7632544
Alignment:
| Q |
77 |
gtgcaattgagctattgagtggacttagtagtgtaaaatctctcaaattatcag |
130 |
Q |
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| T |
7632491 |
gtgcaattgagctattgagtggattaagtagcgtaaagtctctcagcttatcag |
7632544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 370
Target Start/End: Original strand, 7632702 - 7632792
Alignment:
| Q |
283 |
ttctttatatcacaataatcaaactatttatg---tttgttgtactagtgtcttaagttttcagaggatactattcatcttcttccttcat |
370 |
Q |
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| T |
7632702 |
ttctttatatcataatgatcaaactatttatgctttttgtactactagtatcttgagtattcaaaggagactctccatcatcttccttcat |
7632792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 17594816 - 17594859
Alignment:
| Q |
78 |
tgcaattgagctattgagtggacttagtagtgtaaaatctctca |
121 |
Q |
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| T |
17594816 |
tgcaattgagctattgagtcgacttggtagtgtcaaatctctca |
17594859 |
T |
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