View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_high_2 (Length: 601)
Name: NF3872_high_2
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 380 - 588
Target Start/End: Complemental strand, 44999350 - 44999146
Alignment:
| Q |
380 |
tagggctcacgaattggagtttatggatcaaattgtcctcagtggattgtggcaatggaggttcccatttctatataacgttctcacatttctttattta |
479 |
Q |
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| T |
44999350 |
tagggctcacgaattggagtttatggatcaaattgtcctcagtggattgtggcaatggaggttcccatttctatataacgttctcacattt----attta |
44999255 |
T |
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| Q |
480 |
tttattttttccttccttctatatatgattgtgttctattataattcataaacttgtttatgttgatgtatgtaggcttgttgcgcccatagcttggttt |
579 |
Q |
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| T |
44999254 |
tttattttttccttccttctatatatgattgtgttctattataattcataaacttgtttatgttgatgtatgtaggcttgttgcgcccatagcttggttt |
44999155 |
T |
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| Q |
580 |
gtgtgcctc |
588 |
Q |
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||||||||| |
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| T |
44999154 |
gtgtgcctc |
44999146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 44999693 - 44999549
Alignment:
| Q |
16 |
atatgattgtagtgtggcagccaaaaagtatcctcaaaaccgtatgttgggatggcgtgaatttgttgatggaaaggtatttttatgatgacagtcagtc |
115 |
Q |
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| T |
44999693 |
atatgattgtagtgtggcagccaaaaagtatcctcaaaaccgtatgttgggatggcgtgaatttgttgatggaaaggtattttt---atgacagacagtc |
44999597 |
T |
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| Q |
116 |
cattttattttgtgtttatgtcatgtagactatatgacaaggaaattg |
163 |
Q |
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| T |
44999596 |
cattttattttgtgtttatgtcatgtagactatatgacaaggaaattg |
44999549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 197 - 308
Target Start/End: Complemental strand, 44999520 - 44999409
Alignment:
| Q |
197 |
gtttggatcatatgtgtggaagacatataagcaagtttatgatgaagtcatgcatataggttcagctctacgtgcatctggtgctcaacatgtaagtgtt |
296 |
Q |
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| T |
44999520 |
gtttggatcatatgtgtggaagacatataagcaagtttatgatgaagtcatgcatataggttcagctctacgtgcatctggtgctcaacatgtaagtgtt |
44999421 |
T |
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| Q |
297 |
tgcaatgtaaaa |
308 |
Q |
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| T |
44999420 |
tgcaatgtaaaa |
44999409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 38764175 - 38764223
Alignment:
| Q |
45 |
atcctcaaaaccgtatgttgggatggcgtgaatttgttgatggaaaggt |
93 |
Q |
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| T |
38764175 |
atcctcaaaaccgcatgcttggatggcgtaaaattgttgatggaaaggt |
38764223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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