View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3872_high_22 (Length: 291)
Name: NF3872_high_22
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_high_22 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 3545878 - 3546158
Alignment:
| Q |
11 |
cataggtcgtgtaataatatggtgattatataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatcagcaattatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3545878 |
cataggtcgtgtaataatatggtgattatataaaaaacaattacattggtaaacttgttaaatgtttaaagatgttgaattaaaattatcagcaattatg |
3545977 |
T |
|
| Q |
111 |
taatgttaaatatgcaaaaatccgttaaatatgtttcaccacgcccgttgcaaatattccgttcttatatatgtggatgcaaattttatgtatcgatata |
210 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3545978 |
taatgttaaatatgccaaaatccgttaaatatg-ttcaccacgcccgttgcaaatattccgtgcttatatatgtggatgcaaattttatgtatcgatata |
3546076 |
T |
|
| Q |
211 |
attatatatagactttcaatcaaatttca-nnnnnnnnnnnnnaaatatcaacatgtggttgttagatcatgatcgtaatta |
291 |
Q |
| |
|
||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3546077 |
attgtatacagattttcaatcaaatttcatatttattttttttaaatatcaacatgtggttgttagatcatgatcgtaatta |
3546158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 24864999 - 24865081
Alignment:
| Q |
35 |
attatataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatcagcaattatgtaatgtt |
117 |
Q |
| |
|
||||||||||||| ||||| ||| |||| ||||| |||||||||| || || ||| ||||||||||| | | |||||||||| |
|
|
| T |
24864999 |
attatataaaaaataattaaatttttaatattgttgaatgtttaaaaatattaaataaaaattatcagaattaatgtaatgtt |
24865081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 3421404 - 3421331
Alignment:
| Q |
44 |
aaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatcagcaattatgtaatgtt |
117 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||||||| | || ||| |||||||||| || | |||||||||| |
|
|
| T |
3421404 |
aaaacaattacattgctaatattgtgaaatgtttaaaggtattaaataaaaattatcaacattaatgtaatgtt |
3421331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 21118615 - 21118553
Alignment:
| Q |
39 |
tataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatca |
101 |
Q |
| |
|
||||||||| |||||||||| |||| |||| ||||||||||| || || ||| |||||||||| |
|
|
| T |
21118615 |
tataaaaaataattacattgttaatattgtcaaatgtttaaaaatattaaataaaaattatca |
21118553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 494269 - 494332
Alignment:
| Q |
38 |
atataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatca |
101 |
Q |
| |
|
|||||||||| |||| ||||| |||| |||| |||||||||||||| || ||| |||||||||| |
|
|
| T |
494269 |
atataaaaaataatttcattgttaatattgtcaaatgtttaaagatattaaatgaaaattatca |
494332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 7183890 - 7183937
Alignment:
| Q |
35 |
attatataaaaaacaattacattggtaatcttgttaaatgtttaaaga |
82 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||| |||||||| |
|
|
| T |
7183890 |
attatataaaaaacaattacattagtaatattgtgaaatatttaaaga |
7183937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 3927664 - 3927602
Alignment:
| Q |
39 |
tataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatca |
101 |
Q |
| |
|
||||||||||||||| |||| |||| |||| ||||||||||| ||||| ||| || ||||||| |
|
|
| T |
3927664 |
tataaaaaacaattatattgataatattgtgaaatgtttaaaaatgttaaataaatattatca |
3927602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University