View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3872_high_24 (Length: 282)

Name: NF3872_high_24
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3872_high_24
NF3872_high_24
[»] chr2 (1 HSPs)
chr2 (1-282)||(37662389-37662670)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 37662670 - 37662389
Alignment:
Q  1 agaaccataaccaaaacttgatgaatctttcagaatcccttcaagaacagaatgcaatgcagttgaaaatgaagaatacccttttgaaccaagtaactga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37662670 agaaccataaccaaaacttgatgaatctttcagaatcccttcgagaacagaatgcaatgcagttgaaaatgaagaatacccttttgaaccaagtaactga 37662571  T
Q  101 acaaccttgttccattcaacaaagttcttgaaatcaccaacttcatatgttgaatttgtcttgaatgaaggacaagttggtgaacgaatgaaatcagaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  37662570 acaaccttgttccattcaacaaagttcttgaaatcaccaacttcatatgttgaattggttttgaatgaaggacaagttggtgaacgaatgaaatcagaac 37662471  T
Q  201 caccttgtaaaacttcacgttgcaaagaagaaaaaggtccaagaacaccatgaatgttgaattcttcaccaagaaacatatc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37662470 caccttgtaaaacttcacgttgcaaagaagaaaaaggtccaagaacaccatgaatgttgaattcttcaccaagaaacatatc 37662389  T

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