View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_high_28 (Length: 260)
Name: NF3872_high_28
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 37662039 - 37662256
Alignment:
| Q |
26 |
cacaaactcacacactctcaacaaacgcaacagaagcactcaaaaaacaaggttttgttcttatggctgatcttcttcatcgttcaccaccattctttct |
125 |
Q |
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| T |
37662039 |
cacaaactcacacactctcaacaaacgcaacagaagcactcaaaaaacaaggttttgttcttatggctgatcttcttcatcgttcaccaccattctttct |
37662138 |
T |
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| Q |
126 |
tccacctaaaaactcaactttctttgccatcaaagattctgctatcaaaaacacctcactccctctttggttcctcaaaagtcttctaatgtatcacact |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37662139 |
tccacctaaaaactcaactttctttgccatcaaagattctgctatcaaaaacacctcactccctctttggttcctcaaaagtcttctaatgtatcacact |
37662238 |
T |
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| Q |
226 |
ttcactaccaaactcacc |
243 |
Q |
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|||||||||||||||||| |
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| T |
37662239 |
ttcactaccaaactcacc |
37662256 |
T |
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