View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_high_29 (Length: 254)
Name: NF3872_high_29
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 3099295 - 3099061
Alignment:
| Q |
5 |
aaggttggaatgagaaggnnnnnnntgaagttagaacatagtaagaagaagatgtgagctaaggtaagactgtattttttgttgttgaaaatattaaggt |
104 |
Q |
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| T |
3099295 |
aaggttggaatgagaaggaaaaaaatgaagttagaacatagtaagaagaagatgtgagctaaggtaagactgtattttttgttgttgaaaatattaaggt |
3099196 |
T |
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| Q |
105 |
agcactatactaagattttatgaattattaatggtgtatttaacattggaactaggtactgatgcggtttcctagtgtttggtcgacaagtgtgggtata |
204 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3099195 |
agcactatactaagatgttatgaattattaatggtgtatttaacattggaactaggtactgatgcggtttcctagtgtttggtcgacaagtgtgggtata |
3099096 |
T |
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| Q |
205 |
taaaatgatttgtgggtacgagaaaccataatgat |
239 |
Q |
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| T |
3099095 |
taaaatgatttgtgggtacgagaaaccataatgat |
3099061 |
T |
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