View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_high_3 (Length: 548)
Name: NF3872_high_3
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 6 - 530
Target Start/End: Complemental strand, 26669807 - 26669283
Alignment:
| Q |
6 |
agcagcacagacaacactatcaaaaaccctatcttcttcccttaaactctcaaaatcataaacaggattttcaaaggcaaatccatgttcataaagactc |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26669807 |
agcatcacaaacaacactatcaaaaaccctatcttcttcccttaaactctcaaaatcatacacaggattttcaaaggcaaatccatgttcataaagactc |
26669708 |
T |
|
| Q |
106 |
cctctacaaagaggacaagttgaattcgaaagaagccacgtgtcgatacaatcaatatgaaaagcatgattacaaagaggcaacaatctcaacatgtctt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26669707 |
cctctacaaagaggacaagttgaattcgaaagaagccacgtgtcgatacaatcaatatgaaaagcatgattacaaagaggcaacaatctcaacatgtctt |
26669608 |
T |
|
| Q |
206 |
gttcagtgaattgacaaagacaaacagcacaatcaaatggttccttcaaacctattatctctttgtaaaggaaaactggtaaagcatcaatgaaagcttg |
305 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26669607 |
gttctgtgaattgacaaagacaaacagcacaatcaaatggttccttcaaacctattatctctttgtaaaggaaaactggtaaagcatcaatgaaagcttg |
26669508 |
T |
|
| Q |
306 |
atctaaacctgaatcatgaagattgaagagttgttgcaattgtctttgataaggatcaggttcggacatttgagggtagttattattggattgagaattt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26669507 |
atctaaacctgaatcatgaagattgaagagttgttgcaattgtctttgataaggatcaggttcagacatttgagggtagttattattggattgagaattt |
26669408 |
T |
|
| Q |
406 |
gataaagaagatctttttcttatgagaaatctaacaaacagttgaaggataccagaaatgaaaaacacaatagctagaatcactatgatgaaaataacta |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26669407 |
gataaagaagatctttttcttatgagaaatctaacaaacagttgaaggataccagaaatgaaaaacacaatagctagaatcactatgatgaaaataacta |
26669308 |
T |
|
| Q |
506 |
aatggttcattctaatcactagaac |
530 |
Q |
| |
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| T |
26669307 |
aatggttcattctaatcactagaac |
26669283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 159 - 376
Target Start/End: Original strand, 15103672 - 15103889
Alignment:
| Q |
159 |
aatatgaaaagcatgattacaaagaggcaacaatctcaacatgtcttgttcagtgaattgacaaagacaaacagcacaatcaaatggttccttcaaacct |
258 |
Q |
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||||||||||||||| |||||| || |||||||| ||| | |||||||| || | ||| | ||||||||||||||||||||| || |||||||| |
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| T |
15103672 |
aatatgaaaagcatggttacaatttggtaacaatcttaacttatcttgttccaaaaactcacataaacaaacagcacaatcaaatggctctttcaaacca |
15103771 |
T |
|
| Q |
259 |
attatctctttgtaaaggaaaactggtaaagcatcaatgaaagcttgatctaaacctgaatcatgaagattgaagagttgttgcaattgtctttgataag |
358 |
Q |
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| T |
15103772 |
attatctctttgtaaatgaaaacaggaagtgcatcaatgaatgcttgatctaaacctgaatcatgaagattgaaaagctgttgtaactgtctttggtatg |
15103871 |
T |
|
| Q |
359 |
gatcaggttcggacattt |
376 |
Q |
| |
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| T |
15103872 |
catcagattcagacattt |
15103889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 328
Target Start/End: Original strand, 1873530 - 1873752
Alignment:
| Q |
106 |
cctctacaaagaggacaagttgaattcgaaagaagccacgtgtcgatacaatcaatatgaaaagcatgattacaaagaggcaacaatctcaacatgtctt |
205 |
Q |
| |
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|||||||||||||||||||| || || ||||| ||||| || || |||||| |||||||||||||| |||| | ||| |||||||| | | |||||| |
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| T |
1873530 |
cctctacaaagaggacaagtagagtttgaaagtagccaagtatctatacaacttatatgaaaagcatggctacacataggtaacaatcttagcttgtctt |
1873629 |
T |
|
| Q |
206 |
gttcagtgaattgacaaagacaaacagcacaatcaaatggttccttcaaacctattatctctttgtaaaggaaaactggtaaagcatcaatgaaagcttg |
305 |
Q |
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| T |
1873630 |
tctcagtaaactcacacaaacaaacagcacaatcaaaaggctcattcaaaccaacaatctccttgaattgaaaaacaggtagtgcatcaataaaagcttg |
1873729 |
T |
|
| Q |
306 |
atctaaacctgaatcatgaagat |
328 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
1873730 |
atctaaaccagaatcatgaagat |
1873752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 499
Target Start/End: Original strand, 1873846 - 1873920
Alignment:
| Q |
425 |
ttatgagaaatctaacaaacagttgaaggataccagaaatgaaaaacacaatagctagaatcactatgatgaaaa |
499 |
Q |
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|||||||||||||||||| || ||||| | |||||| |||||||||| || ||| |||| |||||||||||||| |
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| T |
1873846 |
ttatgagaaatctaacaagcaaatgaagtaaaccagatatgaaaaacaaaacagcaagaaccactatgatgaaaa |
1873920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 44026715 - 44026781
Alignment:
| Q |
107 |
ctctacaaagaggacaagttgaattcgaaagaagccacgtgtcgatacaatcaatatgaaaagcatg |
173 |
Q |
| |
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||||||||||||||||||| || || || |||||||| ||||| | ||||| |||||||||||||| |
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| T |
44026715 |
ctctacaaagaggacaagtagagtttgagagaagccatgtgtcaagacaattcatatgaaaagcatg |
44026781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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