View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_high_30 (Length: 251)
Name: NF3872_high_30
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 52035009 - 52034802
Alignment:
| Q |
1 |
gttgacaaattcaaactaatattgtaggacttttatcgctcaagacattgcctttcacaccaggggaagttgatgcagttttctcagacttccttcaaaa |
100 |
Q |
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| T |
52035009 |
gttgacaaattcaaactaatattgtaggacttttatcgctcaagacattgcctttcacgccaggggaagttgatgcagttttctcagacttccttcaaaa |
52034910 |
T |
|
| Q |
101 |
cattgaggacatggatgaattgggaggatgtcatccgtgtgatcaatttctgcataattataactttcaaaaactataatccttagctaggaaaaaatcc |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52034909 |
cattgaggaaatggatgaattgggaggatgtcatccgtgtgatcaatttctgcataattataactttcaaaaactataatccttagctaggaaaaaatcc |
52034810 |
T |
|
| Q |
201 |
atcttctc |
208 |
Q |
| |
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|||||||| |
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| T |
52034809 |
atcttctc |
52034802 |
T |
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