View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_high_33 (Length: 250)
Name: NF3872_high_33
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 35045727 - 35045967
Alignment:
| Q |
1 |
catgaatgtccttttatcttagggacattcagaaagtgacattaattgacaaatagtgacatcatagtaaaacttacatcaactctatgatccttttcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045727 |
catgaatgtccttttatcttagggacattcagaaagtgacattaattgacaaatagtgacatcatagtaaaacttacatcaactctatgatccttttcct |
35045826 |
T |
|
| Q |
101 |
gagatgaatctgaaacctgcaatgcaagtaacagtttataagtctcagtttgtgaaattttaatcttatgaaaacttaagcatttctgcaaagttaaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045827 |
gagatgaatctgaaacctgcaatgcaagtaacagtttataagtctcagtttgtgaaattttaatcttatgaaaacttaagcatttctgcaaagttaaagt |
35045926 |
T |
|
| Q |
201 |
caaagatactacattttttactgtagtcttgtcatctgtgc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045927 |
caaagatactacattttttactgtagtcttgtcatctgtgc |
35045967 |
T |
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