View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_high_38 (Length: 236)
Name: NF3872_high_38
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_high_38 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6686208 - 6686443
Alignment:
| Q |
1 |
aacttggttttcaaataagcctttgaccttagcatcattgtacaccatttgagcaagagtggtcttgcctatatataccacaaagaccaacaatagcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
6686208 |
aacttggttttcaaataagcctttgaccttagcatcattgtacaccatttgagcaagagtagtcttgcctatatataccaccaagaccaacaatagcaac |
6686307 |
T |
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| Q |
101 |
agaggaaataacattaacattggagtcttgttcaagcagcatgcttaccatcttcattttctcatcagttctaccaataataatatgatcagattctaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6686308 |
agaggaaataacattaacattggagtcttgttcaagcaacatgcttaccatcttcattttctcatcagttctaccaataataatatgatcagattctaag |
6686407 |
T |
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| Q |
201 |
caattagaactggttgttatcggacgtacacagatc |
236 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
6686408 |
caattagaactggttgttatcagacgtacacagatc |
6686443 |
T |
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