View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_high_42 (Length: 215)
Name: NF3872_high_42
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 47989296 - 47989108
Alignment:
| Q |
14 |
cacagagaagagagtaccatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtga |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47989296 |
cacaaagaagagagtaccatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtga |
47989197 |
T |
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| Q |
114 |
cattccttcattgaatcctatatatgttgattcttcaaagccaataacagttagacctctttctattgtatttgctcatatacctgatg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
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| T |
47989196 |
cattccttcattgaatcctatatatgttgattcttcaaagccaataacagttaggcctctttctattgtatttgcacatataccagatg |
47989108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 47978925 - 47978767
Alignment:
| Q |
29 |
accatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtgacattccttcattgaa |
128 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||||| ||| ||||||||||| |||||| || |||| |
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| T |
47978925 |
accatttaacagcaaaggatggagatttacatagccaaattatgttactaaatggaaacatcctaagtgtaaactcagctggtgatattcctccactgaa |
47978826 |
T |
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| Q |
129 |
tcctatatatgttgattcttcaaagccaataacagttagacctctttctattgtatttg |
187 |
Q |
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||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||| |
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| T |
47978825 |
tcctatatatgttgactcttcaaagccaataacacttgatcctctctctattgtatttg |
47978767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 38356308 - 38356188
Alignment:
| Q |
14 |
cacagagaagagagtaccatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtga |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||||| |||||| |||||| ||| ||||||||||| |
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| T |
38356308 |
cacagagaagagagtaccatttaacagcaaaggatggaaatttacgttgccaaactatgctgctaaatggtaacattttaagtgtaaactcagctggtga |
38356209 |
T |
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| Q |
114 |
cattccttcattgaatcctat |
134 |
Q |
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|||||| |||||||||||| |
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| T |
38356208 |
tattcctctattgaatcctat |
38356188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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