View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3872_high_7 (Length: 466)

Name: NF3872_high_7
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3872_high_7
NF3872_high_7
[»] chr1 (15 HSPs)
chr1 (128-343)||(46700080-46700295)
chr1 (10-118)||(17127411-17127519)
chr1 (13-118)||(21973886-21973991)
chr1 (10-99)||(26273024-26273113)
chr1 (10-90)||(48606707-48606787)
chr1 (10-90)||(52753912-52753992)
chr1 (11-90)||(30559101-30559180)
chr1 (10-90)||(9637121-9637201)
chr1 (10-90)||(25017386-25017466)
chr1 (10-65)||(35949073-35949128)
chr1 (10-90)||(14498898-14498977)
chr1 (10-90)||(40864814-40864894)
chr1 (10-90)||(32379950-32380027)
chr1 (15-64)||(30054847-30054896)
chr1 (404-445)||(46700440-46700481)
[»] scaffold0019 (1 HSPs)
scaffold0019 (10-118)||(134949-135057)
[»] scaffold0015 (1 HSPs)
scaffold0015 (10-122)||(214256-214368)
[»] chr8 (11 HSPs)
chr8 (10-122)||(21958480-21958592)
chr8 (13-118)||(30791556-30791661)
chr8 (10-118)||(16532726-16532834)
chr8 (10-76)||(9256403-9256469)
chr8 (10-90)||(13152489-13152569)
chr8 (10-89)||(27190772-27190851)
chr8 (10-90)||(28846621-28846698)
chr8 (10-90)||(24333714-24333794)
chr8 (10-88)||(14446834-14446912)
chr8 (13-73)||(42446935-42446995)
chr8 (10-65)||(10467789-10467844)
[»] chr7 (11 HSPs)
chr7 (10-118)||(19399950-19400058)
chr7 (10-118)||(27387401-27387509)
chr7 (10-118)||(26493809-26493917)
chr7 (10-118)||(38575384-38575492)
chr7 (10-111)||(45197623-45197723)
chr7 (10-90)||(43727996-43728076)
chr7 (10-82)||(9230409-9230481)
chr7 (10-90)||(23179980-23180060)
chr7 (12-90)||(8638614-8638692)
chr7 (10-76)||(18375420-18375486)
chr7 (44-90)||(23804627-23804673)
[»] chr3 (9 HSPs)
chr3 (10-118)||(31989001-31989109)
chr3 (10-118)||(24908488-24908596)
chr3 (10-118)||(53710370-53710478)
chr3 (10-118)||(43137099-43137207)
chr3 (10-118)||(37381964-37382072)
chr3 (10-90)||(15667973-15668053)
chr3 (10-95)||(43585815-43585897)
chr3 (10-87)||(3856971-3857048)
chr3 (10-90)||(51261979-51262059)
[»] chr4 (7 HSPs)
chr4 (10-118)||(27364855-27364963)
chr4 (10-118)||(55464755-55464863)
chr4 (10-95)||(12211321-12211406)
chr4 (10-111)||(42843686-42843787)
chr4 (10-90)||(31944616-31944696)
chr4 (10-90)||(53693129-53693209)
chr4 (10-90)||(4325412-4325492)
[»] scaffold0007 (1 HSPs)
scaffold0007 (13-127)||(259881-259995)
[»] chr5 (9 HSPs)
chr5 (10-118)||(1280350-1280458)
chr5 (10-118)||(203823-203930)
chr5 (13-118)||(26540753-26540858)
chr5 (10-90)||(3055482-3055562)
chr5 (12-90)||(8785782-8785860)
chr5 (10-71)||(22541905-22541966)
chr5 (10-90)||(11852715-11852795)
chr5 (10-90)||(23244665-23244745)
chr5 (10-53)||(27168898-27168941)
[»] scaffold0168 (1 HSPs)
scaffold0168 (13-118)||(15786-15891)
[»] scaffold0012 (1 HSPs)
scaffold0012 (13-118)||(197077-197182)
[»] chr2 (9 HSPs)
chr2 (13-118)||(22464642-22464747)
chr2 (13-118)||(22483521-22483626)
chr2 (13-118)||(34526324-34526429)
chr2 (10-118)||(35649755-35649861)
chr2 (10-90)||(12539574-12539653)
chr2 (10-90)||(34317562-34317642)
chr2 (10-118)||(33453283-33453391)
chr2 (10-99)||(19951926-19952015)
chr2 (10-61)||(13308745-13308796)
[»] chr6 (7 HSPs)
chr6 (10-118)||(24074384-24074492)
chr6 (10-86)||(11970964-11971040)
chr6 (14-90)||(12180624-12180700)
chr6 (10-83)||(25599159-25599232)
chr6 (10-51)||(3050902-3050943)
chr6 (10-90)||(25340445-25340525)
chr6 (10-90)||(32442069-32442146)
[»] scaffold0178 (1 HSPs)
scaffold0178 (10-90)||(17740-17820)
[»] scaffold0002 (1 HSPs)
scaffold0002 (10-90)||(435445-435530)
[»] scaffold0198 (1 HSPs)
scaffold0198 (10-56)||(1430-1476)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 128 - 343
Target Start/End: Original strand, 46700080 - 46700295
Alignment:
Q  128 gatcatcttcccaaataattgttccaccctcatttggttatggcccttcaataattgagattagaggatcaaccttagacgaatccttcatagagtcatc 227  Q
    |||| |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  46700080 gatcgtcttcccaaatatttgttccaccctcaattggttctggcccttcaataattgagattagaggatcatcctgagatgaatcctccatagagtcatc 46700179  T
Q  228 ttgtgtatagccaagcaattcttcaatagagacagcctcctcaactgagagtagactaaagaggtagatgtgaaacaagtaatcatcctgcatattttca 327  Q
    || |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46700180 ttctgtatagccaagcaattctttaatagagactgcttcctcaactgagagtagactaaagaggtagatgtgaaacaagtaatcatcctgcatattttca 46700279  T
Q  328 agcataaaaatatgaa 343  Q
    |||||||| |||||||    
T  46700280 agcataaagatatgaa 46700295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 17127519 - 17127411
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  17127519 acatcatcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttgataa 17127420  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  17127419 tcttcattg 17127411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 21973886 - 21973991
Alignment:
Q  13 tcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataatct 112  Q
    ||||||||||| |||||||||||| ||||  |||||||||||||||| ||||| |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  21973886 tcatcaagtgatttgaatatctcccgctcagtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcacaatttagtcttgataatct 21973985  T
Q  113 tcattg 118  Q
    ||||||    
T  21973986 tcattg 21973991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 26273024 - 26273113
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaattta 99  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||| ||||||| |||||||    
T  26273024 acatcatcacgtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacacatcgttgattttgttgcgcaattta 26273113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 48606707 - 48606787
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||    
T  48606707 acattatcaagttacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 48606787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 52753912 - 52753992
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||| |||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  52753912 acatcatcaaatgacttgaatatctcccgttcgatgtaacatatcatcaagtcattgaaccacacatcgttgatcatgttg 52753992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 30559101 - 30559180
Alignment:
Q  11 catcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||||||||||||||||||  ||||| |||||||||||||||||||||  |||||||||| |||||||||||||    
T  30559101 catcatcaagtgacttgaatatctctcgctcggtgtaacatatcatcaagtcatagaaccacacatcgttgatcttgttg 30559180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 9637201 - 9637121
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |||||| |||  ||||||||||||    
T  9637201 acatcatcaagtgacttgaatatcacccgctcggtgtaacatatcatcaagtcattgaaccacgcatcattgatcttgttg 9637121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 25017466 - 25017386
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||||||| |||||||||||  ||||| ||||| |||||||||||||||| |||||||||| |||||||||||||    
T  25017466 acatcatcaagtgatttgaatatctctcgctcggtgtaagatatcatcaagtcattgaaccacacatcgttgatcttgttg 25017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 35949073 - 35949128
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcatt 65  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  35949073 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatt 35949128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 14498977 - 14498898
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||  |||||| || ||||||| |||||    
T  14498977 acatcatcaaatgacttgaatatctcccgctcgatgtaagatatcatcaagtcatt-gaccacaaatcgttgatcatgttg 14498898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 40864814 - 40864894
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||| ||||||||||||||||||| |  | ||| ||||| |||||||||||||||| |||||||||| |||||||||||||    
T  40864814 acattatcaagtgacttgaatatccctcgttcggtgtaagatatcatcaagtcattgaaccacacatcgttgatcttgttg 40864894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 32379950 - 32380027
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||||||| |||||||||||| | | | ||||||||||||   ||||||| |||||||||| |||||||||||||    
T  32379950 acatcatcaagtgaattgaatatctcccgtttggtgtaacatatca---agtcattgaaccacacatcgttgatcttgttg 32380027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 30054896 - 30054847
Alignment:
Q  15 atcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcat 64  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||||||    
T  30054896 atcaagtgacttgaatatctcccgctcggtgtaacatatcattaagtcat 30054847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 46700440 - 46700481
Alignment:
Q  404 gaagtgagtggcattttaataattttgatgaaaagaaaacat 445  Q
    |||||||||  ||||||||||||||||| |||||||||||||    
T  46700440 gaagtgagttacattttaataattttgaggaaaagaaaacat 46700481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 134949 - 135057
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  134949 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccacacattgttcatcttgttgcacaatttagtcttgataa 135048  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  135049 tcttcattg 135057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 214256 - 214368
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||  |||||||| |||||||    
T  214256 acatcatcaagtgactcgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacatattgttgatcttgttgcgtaatttagtcttgataa 214355  T
Q  110 tcttcattggtga 122  Q
    |||||||||||||    
T  214356 tcttcattggtga 214368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 21958592 - 21958480
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||  |||||||| |||||||    
T  21958592 acatcatcaagtgactcgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacatattgttgatcttgttgcgtaatttagtcttgataa 21958493  T
Q  110 tcttcattggtga 122  Q
    |||||||||||||    
T  21958492 tcttcattggtga 21958480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 30791556 - 30791661
Alignment:
Q  13 tcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataatct 112  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||| | ||||||||||    
T  30791556 tcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccactcattcttgatcttgttgcgcaatttaatcttgataatct 30791655  T
Q  113 tcattg 118  Q
    ||||||    
T  30791656 tcattg 30791661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 16532726 - 16532834
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||||||||||||   || | | |||||||||||||||||||| |||||||||| |||||||||||||   |||||||| |||||||    
T  16532726 acatcatcaagtgacttgaatatctctcacttggtataacatatcatcaagtcattgaaccacacatcgttgatcttgttgtgtaatttagtcttgataa 16532825  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  16532826 tcttcattg 16532834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 9256469 - 9256403
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacat 76  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  9256469 acatcatcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattaaaccacacat 9256403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 13152489 - 13152569
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||  ||||||| |||||    
T  13152489 acatcatcaaatgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacagcgttgatcatgttg 13152569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 27190851 - 27190772
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgtt 89  Q
    ||||||||||||||||||||||||||| ||| | || ||||||||||||||||||| |||||||||| ||||||||||||    
T  27190851 acatcatcaagtgacttgaatatctcccgctaggtgcaacatatcatcaagtcattgaaccacacatcgttgatcttgtt 27190772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 28846698 - 28846621
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    ||||||||||||||||||||||||||| |||||||||   | |||||||||||||| |||||||||| |||||||||||||    
T  28846698 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 28846621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 24333794 - 24333714
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||| |||||||| || || |||| |||||||||||||    
T  24333794 acatcatcaagtgacttgaatatctcccgctcagtgtaacatatcataaagtcattgaatcatacatcgttgatcttgttg 24333714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 14446912 - 14446834
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgt 88  Q
    ||||||||||||||||||||||||||   || | |||||||||||||||||||||| ||||||| || |||||||||||    
T  14446912 acatcatcaagtgacttgaatatctctctcttggtgtaacatatcatcaagtcattgaaccacaaatcgttgatcttgt 14446834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 42446995 - 42446935
Alignment:
Q  13 tcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccaca 73  Q
    |||||||||||||||||||||| | |||||||||||||||| |||| ||||||||||||||    
T  42446995 tcatcaagtgacttgaatatcttccgctcgatgtaacatataatcacgtcattcaaccaca 42446935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 10467844 - 10467789
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcatt 65  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||    
T  10467844 acatcatcaaatgacttgattatctcccgctcgatgtaacatatcatcaagtcatt 10467789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 19400058 - 19399950
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  19400058 acatcatcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttgataa 19399959  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  19399958 tcttcattg 19399950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 27387401 - 27387509
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||    
T  27387401 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttaataa 27387500  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  27387501 tcttcattg 27387509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 26493809 - 26493917
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||| |||||||    
T  26493809 acatcatcaagtgacttgaatatctcccgctcggtgtaacgtatcatcaagtcatttaaccacacattgttcatcttgttgcgcaatttagtcttgataa 26493908  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  26493909 tcttcattg 26493917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 38575384 - 38575492
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||||||| || ||||    
T  38575384 acatcatcaagtgactttaatatctcccgctcggtgtaacatatcatcaagtcgttcaaccacccattgttgatattgttgcgcaatttagtcttaataa 38575483  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  38575484 tcttcattg 38575492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 45197723 - 45197623
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||| |||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||| ||||||| | |||||||    
T  45197723 acatcgtcaagtgacttgaatatctcctgctcgatg-aatatatcatcaagtcattgaaccacacattgttgatcttgttgcgcaatttaatcttgataa 45197625  T
Q  110 tc 111  Q
    ||    
T  45197624 tc 45197623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 43728076 - 43727996
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||| |||||||||||||||| | ||||| |||||||||||||||||||| |||||||||| ||||||| |||||    
T  43728076 acatcatcaactgacttgaatatctcccgttcgatataacatatcatcaagtcattgaaccacacatcgttgatcatgttg 43727996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 9230481 - 9230409
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttga 82  Q
    |||||||||| |||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||| |||||    
T  9230481 acatcatcaaatgacttgagtatctcccgctctatgtaacatatcatcaagtcattgaaccacacatcgttga 9230409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 23179980 - 23180060
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||| |||||||| ||||||||||||  ||||| |||||||||||||||||| ||| || ||||||| |||||||||||||    
T  23179980 acattatcaagtgccttgaatatctctcgctcggtgtaacatatcatcaagttattgaaacacacatcgttgatcttgttg 23180060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 8638692 - 8638614
Alignment:
Q  12 atcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||| ||||||||||||||| || ||| | |||||||||||||||| ||| |||||||| | |||||||||||||    
T  8638692 atcatcaaatgacttgaatatctcttgttcggtataacatatcatcaagtaattaaaccacacgtcgttgatcttgttg 8638614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 18375486 - 18375420
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacat 76  Q
    |||| ||| ||||| |||||||||||| |||| |||||| |||||||||||||||| ||||||||||    
T  18375486 acattatctagtgatttgaatatctcccgctccatgtaatatatcatcaagtcattgaaccacacat 18375420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 23804627 - 23804673
Alignment:
Q  44 tgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    ||||| |||||| ||||||||| |||||||||| |||||||||||||    
T  23804627 tgtaatatatcaacaagtcattgaaccacacatcgttgatcttgttg 23804673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 31989109 - 31989001
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||    
T  31989109 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttaataa 31989010  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  31989009 tcttcattg 31989001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 24908488 - 24908596
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  24908488 acatcttcaagcgacttgaatatctcctgcttggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttactcttgataa 24908587  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  24908588 tcttcattg 24908596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 53710478 - 53710370
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||  |||||||||||||||||| ||||||||| |||||||    
T  53710478 acatcatcaagtgacttgaatatctcccgctcggtgtaacagatcatcaagtcattcaaccatccattgttgatcttgttgcgcaatttagtcttgataa 53710379  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  53710378 tcttcattg 53710370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 43137207 - 43137099
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |||| |||||||||||||| ||||||||  |||||||    
T  43137207 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccatacatcgttgatcttgttgcgcaatttagagttgataa 43137108  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  43137107 tcttcattg 43137099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 37381964 - 37382072
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    |||||||||| ||||||||||||||| |||||  ||||| |||||||| ||||||| |||||||||| ||||||||||||||  |||||||  |||||||    
T  37381964 acatcatcaaatgacttgaatatctcatgctcagtgtaatatatcatcgagtcatttaaccacacatcgttgatcttgttgcgaaatttagacttgataa 37382063  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  37382064 tcttcattg 37382072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 15668053 - 15667973
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    ||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||| ||||||||||  ||||||||||||    
T  15668053 acatcatcaagtgacttgaatatctcccgctcggtataacatatcatcaagttattgaaccacacatccttgatcttgttg 15667973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 43585897 - 43585815
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaa 95  Q
    ||||| |||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  43585897 acatcgtcaagtaacttggatatctcccgctcggtgtaacatatcatcaagtcattcaacca---gttgttgatcttgttgcacaa 43585815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 3856971 - 3857048
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttg 87  Q
    |||||||||| ||||||||||||||||  |||   ||||||| ||||||||||||| |||||||||| ||||||||||    
T  3856971 acatcatcaaatgacttgaatatctcccactctgagtaacatgtcatcaagtcatttaaccacacatcgttgatcttg 3857048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 51262059 - 51261979
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    ||||||||||||||||||||||||| | |||   |||||||||||||||| |||||  ||||||| | |||||||||||||    
T  51262059 acatcatcaagtgacttgaatatcttccgcttagtgtaacatatcatcaattcattgtaccacacttcgttgatcttgttg 51261979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 27364963 - 27364855
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| |||||||    
T  27364963 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccacacactgttgatcttgttgcgcaatttagtcttgataa 27364864  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  27364863 tcttcattg 27364855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 55464755 - 55464863
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  55464755 acatcatcaagtgacttgattttctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttgataa 55464854  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  55464855 tcttcattg 55464863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 12211321 - 12211406
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaa 95  Q
    |||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  12211321 acatcatcaaatgacttgaatatctcctgttcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttgcacaa 12211406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 42843787 - 42843686
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||||||||||||   ||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||    
T  42843787 acatcatcaagtgacttgaatatctctcactcaatataacatatcatcaactcattaaaccacacattgttgatcttgttgcacaatttagtcttaataa 42843688  T
Q  110 tc 111  Q
    ||    
T  42843687 tc 42843686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 31944696 - 31944616
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    ||||||||||||||||||||||||||   |||| |||||||||||||||||||||| |||||||||| |||||||||||||    
T  31944696 acatcatcaagtgacttgaatatctcacactcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 31944616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 53693129 - 53693209
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| |||||||||  ||||||| |||||    
T  53693129 acatcatcaagtgccttgattatctcccgctcgatgtaacatatcatcaagtcattgaaccacacaccgttgatcatgttg 53693209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 4325492 - 4325412
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||||||  |||| |||||||  |||| |||||||||||||||||||||| |||||||||| |||||||||||||    
T  4325492 acatcatcaagtgggttgattatctcccactcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 4325412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 259995 - 259881
Alignment:
Q  13 tcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataatct 112  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||||||||||    
T  259995 tcatcaagtgacttgaatatatcccgctcgatgtaacatatcatcaagtcattgaaccactcattgttgatcttgttgcgcaatttagtcttgataatct 259896  T
Q  113 tcattggtgacaaaa 127  Q
    |||||| ||| ||||    
T  259895 tcattgctgaaaaaa 259881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 1280458 - 1280350
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||  |||||||    
T  1280458 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaaatcattgaaccacacattgttgatcttattgcgcaatttagacttgataa 1280359  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  1280358 tcttcattg 1280350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 203930 - 203823
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||  |  ||||||||||||||||||||||||||||||| |||||||    
T  203930 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttta-tacacattgttgatcttgttgcacaatttagtcttgataa 203832  T
Q  110 tcttcattg 118  Q
    | |||||||    
T  203831 ttttcattg 203823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 26540753 - 26540858
Alignment:
Q  13 tcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataatct 112  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||| ||||| |||||| ||||||| |||||||||| ||||||||| ||||||||||    
T  26540753 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatct 26540852  T
Q  113 tcattg 118  Q
    ||||||    
T  26540853 tcattg 26540858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 3055562 - 3055482
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  3055562 acatcatcaaatgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacatcgttgatcatgttg 3055482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 8785860 - 8785782
Alignment:
Q  12 atcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||| ||| |||||||||||| ||| ||||||| |||| ||||||||||| |||||||||| |||||||||||||    
T  8785860 atcatcaactgaattgaatatctcccgcttgatgtaatatattatcaagtcattgaaccacacatcgttgatcttgttg 8785782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 22541966 - 22541905
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaacca 71  Q
    |||||||| |||||||||||||||| | | ||||||||||||||||||||||||||||||||    
T  22541966 acatcatcgagtgacttgaatatcttccgttcgatgtaacatatcatcaagtcattcaacca 22541905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 11852795 - 11852715
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||||||| || ||||||||| | ||| |||||||||||||||||||||| ||||||||||  || |||||||||    
T  11852795 acatcatcaagtgagttaaatatctcccgttcggtgtaacatatcatcaagtcattgaaccacacatctttcatcttgttg 11852715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 23244665 - 23244745
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||||||||| ||||| || | ||||||  |||||||||||||||||||| ||| |||||| |||||||||||||    
T  23244665 acatcatcaagtgactagaataacttccgctcgacataacatatcatcaagtcattgaacgacacatcgttgatcttgttg 23244745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 27168898 - 27168941
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatat 53  Q
    |||| |||||||||||||||||||||| ||||| ||||||||||    
T  27168898 acattatcaagtgacttgaatatctcccgctcggtgtaacatat 27168941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 15891 - 15786
Alignment:
Q  13 tcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataatct 112  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||| ||||| |||||| ||||||| |||||||||| ||||||||| ||||||||||    
T  15891 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatct 15792  T
Q  113 tcattg 118  Q
    ||||||    
T  15791 tcattg 15786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 197182 - 197077
Alignment:
Q  13 tcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataatct 112  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||| ||||| |||||| ||||||| |||||||||| ||||||||| ||||||||||    
T  197182 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaattcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatct 197083  T
Q  113 tcattg 118  Q
    ||||||    
T  197082 tcattg 197077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 22464747 - 22464642
Alignment:
Q  13 tcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataatct 112  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||| ||||| |||||| ||||||| |||||||||| ||||||||| ||||||||||    
T  22464747 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatct 22464648  T
Q  113 tcattg 118  Q
    ||||||    
T  22464647 tcattg 22464642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 22483626 - 22483521
Alignment:
Q  13 tcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataatct 112  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||||  ||||||| |||||||||| ||||||||| ||||||||||    
T  22483626 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccattcattgttaatcttgttgcgcaatttagtcttgataatct 22483527  T
Q  113 tcattg 118  Q
    ||||||    
T  22483526 tcattg 22483521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 34526429 - 34526324
Alignment:
Q  13 tcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataatct 112  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||| ||||| |||||| ||||||| |||||||||| ||||||||| ||||||||||    
T  34526429 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatct 34526330  T
Q  113 tcattg 118  Q
    ||||||    
T  34526329 tcattg 34526324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 35649755 - 35649861
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||| ||||||||| | |  ||||||||| || ||||    
T  35649755 acatcatcaaatgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaacaacacatcgttgatcttctgg--caatttagtctttataa 35649852  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  35649853 tcttcattg 35649861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 12539653 - 12539574
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||||||||||||||||||  |||||| | |||||||||||||||||||| |||||| |||||||||||||||||    
T  12539653 acatcatcaagtgacttgaatatcttatgctcggt-taacatatcatcaagtcattgaaccacgcattgttgatcttgttg 12539574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 34317562 - 34317642
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    ||||||| |||||||||||||||||| | |||| |||||||||||||||||||||| ||||||||||  ||||||||||||    
T  34317562 acatcatgaagtgacttgaatatctcttactcggtgtaacatatcatcaagtcattgaaccacacatcattgatcttgttg 34317642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 33453283 - 33453391
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaa-catatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgata 108  Q
    ||||||||||||||||| ||||||||| ||||| ||||| ||||| || |||||||| | |||||||| |||||||||||||| || |||||  ||||||    
T  33453283 acatcatcaagtgacttaaatatctcccgctcggtgtaaacatatgatgaagtcattga-ccacacatcgttgatcttgttgcgcagtttagacttgata 33453381  T
Q  109 atcttcattg 118  Q
    ||||||||||    
T  33453382 atcttcattg 33453391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 19951926 - 19952015
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaattta 99  Q
    ||||||||||||||||||||||||||  ||||  ||| ||||||| |||||||||| ||||| |||| ||| |||||||||| |||||||    
T  19951926 acatcatcaagtgacttgaatatctctcgctcagtgtgacatatcgtcaagtcattgaaccatacatcgttaatcttgttgcgcaattta 19952015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 13308796 - 13308745
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagt 61  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  13308796 acatcatcaagtgacttgaatatctctcgctcggtgtaacatatcatcaagt 13308745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 24074492 - 24074384
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcacaatttagtattgataa 109  Q
    |||||||||||| ||||||||||||||  |||| ||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||| || | ||    
T  24074492 acatcatcaagtaacttgaatatctccccctcggtgtaacatatcatcaagtcattttaccacacattgttgatcttgttgcgcaatttagtcttcacaa 24074393  T
Q  110 tcttcattg 118  Q
    |||||||||    
T  24074392 tcttcattg 24074384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 11971040 - 11970964
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatctt 86  Q
    ||||||||||||||||||||||||| | ||||| |||||||||| ||||||||||| |||||||||| |||||||||    
T  11971040 acatcatcaagtgacttgaatatcttccgctcggtgtaacatatgatcaagtcattgaaccacacatcgttgatctt 11970964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 12180624 - 12180700
Alignment:
Q  14 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    ||||||||||||||||| |||||  |||| |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  12180624 catcaagtgacttgaatttctcccactcggtgtaacatatcatcaagtcattgaaccacacaatgttgatcttgttg 12180700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 25599232 - 25599159
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgat 83  Q
    ||||||||||||||||||| |||||||  |||||||||||||| |||||||||||| |||| ||| | ||||||    
T  25599232 acatcatcaagtgacttgattatctcccactcgatgtaacataccatcaagtcattgaaccgcacgtcgttgat 25599159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 3050943 - 3050902
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacat 51  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  3050943 acatcatcaagtgacttgaatatctcccgctcggtgtaacat 3050902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 25340525 - 25340445
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    ||||||||||||||||| ||||||| |  || | |||||||||||||||| ||| | || |||||||  ||||||||||||    
T  25340525 acatcatcaagtgacttaaatatcttccactgggtgtaacatatcatcaaatcacttaatcacacatcattgatcttgttg 25340445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 32442069 - 32442146
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||||||||||| |  | ||||| | ||||||||||||||||||| |||||||| |||||||||| ||| ||| |||||    
T  32442069 acatcatcaagtgatt--attatcttccgctcgatgtaacatatcat-aagtcattgaaccacacatcgttaatcatgttg 32442146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 17820 - 17740
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||||||||||    
T  17820 acatcagcaagtgacttaaatatctcccgctcgatgtaacgtatcatcaagtcattgaaccacacatcgttgatcttgttg 17740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 435445 - 435530
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaa-----catatcatcaagtcattcaaccacacattgttgatcttgttg 90  Q
    |||| |||||||||||||||||||| | ||||| |||||     ||||||||||||||||| | ||||||||| ||||||||||||    
T  435445 acataatcaagtgacttgaatatcttccgctcggtgtaacatatcatatcatcaagtcattgagccacacattattgatcttgttg 435530  T

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Target: scaffold0198 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 1476 - 1430
Alignment:
Q  10 acatcatcaagtgacttgaatatctcctgctcgatgtaacatatcat 56  Q
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T  1476 acatcatcaagtgatttgaatatctcccgctcggtgtaacatatcat 1430  T

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