View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3872_low_1 (Length: 967)
Name: NF3872_low_1
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 887; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 887; E-Value: 0
Query Start/End: Original strand, 1 - 959
Target Start/End: Original strand, 41522827 - 41523785
Alignment:
| Q |
1 |
agagcttaaacaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatcgtaataggaaacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
41522827 |
agagcttaaacaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatcgtattaggaaacgt |
41522926 |
T |
|
| Q |
101 |
ggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagcttcaaagtataaacaataaatggtttcagaaggatgaaaaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41522927 |
ggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagcttcaaagtataaacaataaatggtttcagaaggatgaaaaaaca |
41523026 |
T |
|
| Q |
201 |
acataaatagaaaagagcaagtatataatatatacttaacactttccaagagataagttcctaaagaggtcaaaagaatgatcattcacgccatctcttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
41523027 |
acataaatagaaaagagcaagtatataatatatacttaacactttccaagagataagttcctaaagaggtcgaaagaatgatcattcacgccatctcttt |
41523126 |
T |
|
| Q |
301 |
ctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataactacctaccactagaccctggcatctcaacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
41523127 |
ctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataactagctcccactagaccctggcatctcaacc |
41523226 |
T |
|
| Q |
401 |
actttcttgagccttctagccttgaccaacaatcatgacacagttggtctacaatcagttctctaggaacatctctcctattctagtaaagttactaatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41523227 |
actttcttgagccttctagccttgaccaacaatcatgacacaattggtctacaatcagttctctaggaacatctctcctattctagtaaagttactaatg |
41523326 |
T |
|
| Q |
501 |
tttttgggctcctgaagcacagccctgtctcaaggctgaaatttgtgcttcgcctcattaatttatcttccaaagtagctttctcagcatgtttgttctg |
600 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41523327 |
tttttgggctcctgaagcgcagccctgtctcaaggctgaaattagtgcttcgcctcattaatttatcttccaaagtagctttctcagcatgtttgttctg |
41523426 |
T |
|
| Q |
601 |
caactgagtcaatacatgtcttgtccattgcatatggcgaagaaaaacctccctagaaccaaaatttatttgaggttttacagttcatgtcaacgctact |
700 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
41523427 |
caactgagtcaatacatgtcttgtcaattgcatatggtgaagaaaaacctccctagaaccaaaatttatttgaggttttacagttcatgtcaacactact |
41523526 |
T |
|
| Q |
701 |
tccatttccataggaaaatcagtttcaggtaaaatgaaaaagtcaatagcttgcttgggttgagtaacatagaataaagatgtgtttcaatagtcaattt |
800 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41523527 |
tccatttccataggaaaatcagtttcagctaaaatgaaaaagtcaatagcttgcttggattgagtaacatagaataaagatgtgtttcaatagtcaattt |
41523626 |
T |
|
| Q |
801 |
ataaaacaagaaaatcatttaccagtccaatctacctagcaatctgatctaacatatatccgatcacacataaatttaatatttatcaagtaacattaaa |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41523627 |
ataaaacaagaaaatcatttaccagtccaatctaccaagcaatctgatctaacatttatctgatcacacataaattcaatatttatcaagtaacattaaa |
41523726 |
T |
|
| Q |
901 |
aaatgcatatctttataggaataagatatgcatgcataatttccatatacctgatgatg |
959 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41523727 |
aaatgcatatctttataggaataaaatatgcatgcataatttccatatacctgatgatg |
41523785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 5 - 528
Target Start/End: Original strand, 41513867 - 41514390
Alignment:
| Q |
5 |
cttaaacaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatcgtaataggaaacatggag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
41513867 |
cttaaacaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatcgttttaggaaacgtggag |
41513966 |
T |
|
| Q |
105 |
tgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagcttcaaagtataaacaataaatggtttcagaaggatgaaaaaacaacat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41513967 |
tgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagcttcaaagtataaataataaatggtttcagaaggatgaaaaaacaacat |
41514066 |
T |
|
| Q |
205 |
aaatagaaaagagcaagtatataatatatacttaacactttccaagagataagttcctaaagaggtcaaaagaatgatcattcacgccatctctttctag |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41514067 |
aaatagaaaagagcaagtatataatatatactcaacactttccaagagataagttcctaaagaggtcaaaagaatgatcattcacaccatctctttctag |
41514166 |
T |
|
| Q |
305 |
gtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataactacctaccactagaccctggcatctcaaccactt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
41514167 |
gtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataactagctcccactagaccctggcatctcaaccactt |
41514266 |
T |
|
| Q |
405 |
tcttgagccttctagccttgaccaacaatcatgacacagttggtctacaatcagttctctaggaacatctctcctattctagtaaagttactaatgtttt |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41514267 |
tcttgagccttctagccttgaccaacaatcatgacacaattggtctagaatcagttctctaggaacatctctcctattctagtaaagttactaatgtttt |
41514366 |
T |
|
| Q |
505 |
tgggctcctgaagcacagccctgt |
528 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41514367 |
tgggctcctgaagcacagccctgt |
41514390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 782 - 959
Target Start/End: Original strand, 41514656 - 41514834
Alignment:
| Q |
782 |
gtgtttcaatagtcaatttataaaa-caagaaaatcatttaccagtccaatctacctagcaatctgatctaacatatatccgatcacacataaatttaat |
880 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||||||| |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
41514656 |
gtgtttcaatagtcaatctataaaaacaataaaatcatgtaccaggccaatctacctagcaatctgatcaaacatttatccgatcacacataaattcaat |
41514755 |
T |
|
| Q |
881 |
atttatcaagtaacattaaaaaatgcatatctttataggaataagatatgcatgcataatttccatatacctgatgatg |
959 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
41514756 |
atttatcaagtaacattaaaaaatgcatatctttataggaataagagatgcattcatagtttccatatacctgatgatg |
41514834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 33080608 - 33080749
Alignment:
| Q |
9 |
aacaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatcgtaataggaaacatggagtgta |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
33080608 |
aacaattaggtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatcattttaggaaacatggagtgta |
33080707 |
T |
|
| Q |
109 |
aaataataataataacattctaggtaagaagcaagactcaaagta |
153 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
33080708 |
aaataataataat---attctaggtaagaagcaagattcaaagta |
33080749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 670 - 782
Target Start/End: Original strand, 41514390 - 41514502
Alignment:
| Q |
670 |
ttgaggttttacagttcatgtcaacgctacttccatttccataggaaaatcagtttcaggtaaaatgaaaaagtcaatagcttgcttgggttgagtaaca |
769 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41514390 |
ttgaggttttacagttcatgtcaacgctacttccatttccataggaaaatcagtttcagctaaaatgaaagagtcaatagcttgcttgggttgagtaaca |
41514489 |
T |
|
| Q |
770 |
tagaataaagatg |
782 |
Q |
| |
|
| |||||||||| |
|
|
| T |
41514490 |
tgtaataaagatg |
41514502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 253 - 417
Target Start/End: Original strand, 41507873 - 41508041
Alignment:
| Q |
253 |
ataagttcctaaagaggtcaaaagaatgatcattcacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttc |
352 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| ||| ||||| |||||| | | |||||||||||||| ||| |||||||||||||| ||||| ||| |
|
|
| T |
41507873 |
ataagctcctaaagaggaaaaaaggataatcatccacaacatctgtttctaaattctaagtaacctcccctgcatcaccactctcattcagtactctttc |
41507972 |
T |
|
| Q |
353 |
acgacactactgaataactacctaccac----tagaccctggcatctcaaccactttcttgagccttct |
417 |
Q |
| |
|
||| ||||| |||||||| || |||| ||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
41507973 |
tcgatgctactaaataactaactcccacccattagaccctgccataacaaccactttcttgagccttct |
41508041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 41508387 - 41508450
Alignment:
| Q |
10 |
acaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatc |
73 |
Q |
| |
|
|||| ||||||||| ||| |||||| ||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
41508387 |
acaactaagtccccattttgctaatagccttgttggttttgcttcttcaccaagtgagagcatc |
41508450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 310 - 409
Target Start/End: Original strand, 41517523 - 41517626
Alignment:
| Q |
310 |
aagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataacta----cctaccactagaccctggcatctcaaccacttt |
405 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |||| ||| |||| || || |||||||| ||| ||||||||||||| ||| |||||||||| |
|
|
| T |
41517523 |
aagtaacctcccctgcataaccactctcattcagtactatttctcgacgctgctaaataactaactccctcccactagaccctgccataacaaccacttt |
41517622 |
T |
|
| Q |
406 |
cttg |
409 |
Q |
| |
|
|||| |
|
|
| T |
41517623 |
cttg |
41517626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 33080741 - 33080801
Alignment:
| Q |
157 |
ttcaaagtataaacaataaatggtttcagaaggatga-aaaaacaacataaatagaaaagagc |
218 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | || |||||||||| |||||||||||||| |
|
|
| T |
33080741 |
ttcaaagtataaactataaatggtttcagaa--aagagaaaaacaacaaaaatagaaaagagc |
33080801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 41468444 - 41468479
Alignment:
| Q |
153 |
aagcttcaaagtataaacaataaatggtttcagaag |
188 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41468444 |
aagcttcaaagtacaaacaataaatggtttcagaag |
41468479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 2438703 - 2438645
Alignment:
| Q |
359 |
ctactgaataactacctaccactagaccctggcatctcaaccactttcttgagccttct |
417 |
Q |
| |
|
|||||||||||||| || | || |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
2438703 |
ctactgaataactaactcctacaagaccctgccatctcaaccactttattgagccttct |
2438645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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