View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_low_11 (Length: 411)
Name: NF3872_low_11
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Original strand, 34825237 - 34825617
Alignment:
| Q |
13 |
ggtaggaaacacatgtcctagtatatactttgaaataataagagctttggatccatccaggaccaagctgggaaaatcttcacacttggttcttgatttt |
112 |
Q |
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| T |
34825237 |
ggtaggaaacacatgtcctagtatatactttgaaataataagagctttggatccatccaggaccaagctgggaaaatcttcacacttggttcttgatttt |
34825336 |
T |
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| Q |
113 |
aaaatccacacccaccaatcaaacattaactgtgctgcttcatttggttccactcattgccaaaaatacacgtcagtggaggtggagtcagcgacataaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34825337 |
aaaatccacacccaccaatcaaacattaactgtgctgcttcatttggttccactcattgccaaaaatacacgtcagtgaaggtggagtcagcgacataaa |
34825436 |
T |
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| Q |
213 |
caccatgccatgctgtatcattcaattcaatatgaaaagtagttgaatagaaacttatgtgaaacgaaatacatttagtggtagcagttcatgtttagaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34825437 |
caccatgccatgctgtatcattcaattcaatatgaaaagtagttgaatagaaacttatgtgaaacgaaatacatttagtggtagcagttcatgtttagaa |
34825536 |
T |
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| Q |
313 |
tcacactgtatttgataaaattgtattacgatactttgattttaaagaaactttgatagtttttgtcagtggcgtatctag |
393 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34825537 |
tcacactgtatttgataaaattgtattatgatactttgattttaaagaaactatgatagtttttgtcagtggcgtatctag |
34825617 |
T |
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