View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_low_16 (Length: 353)
Name: NF3872_low_16
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 39290120 - 39290414
Alignment:
| Q |
5 |
attgttcatgatactgttgtttctggtcgtcctaatgtggctgagatgagtgtgaatgctgctattaattggaatgttgaagttgttattgttacaagta |
104 |
Q |
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| T |
39290120 |
attgttcatgatactgctgtttctggtcgtcctaatgtggctgagatgagtgtgaatgctgctattaattggaatgttgaagttgttattgtcacaagta |
39290219 |
T |
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| Q |
105 |
atcctgaaggtagtagagatgttgttagagcttgtaacaaggctaagattcctgcatttggtccaatttgggactcttgaatggctcaaaattacacaaa |
204 |
Q |
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| T |
39290220 |
atcctgaaggtagtagagatgttgttagagcttgtaacaaggctaagattcctgcatttggtccaatttgggactcttgaatggctcaaaattacacaaa |
39290319 |
T |
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| Q |
205 |
attttaaggcaagtaatttgttactccttctctgtttgcttgaaacactgtaaaaatttattaagttacttttgtttacctatagtagaaactta |
299 |
Q |
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| T |
39290320 |
attttaaggcaagtaatttgttactccttctctgtttgcttgaaacactgtaaaaatttatttagttacttttgtttacctatagtagaaactta |
39290414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 39296996 - 39297221
Alignment:
| Q |
1 |
aattattgttcatgatactgttgtttctggtcgtcctaatgtggctgagatgagtgtgaatgctgctattaattggaatgttgaagttgttattgttaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39296996 |
aattattgttcatgatactgttgtttctggtcgtcctaatgtggctgagatgagtgtgaatgctgctaataattggaatgttgaagttgttattgttaca |
39297095 |
T |
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| Q |
101 |
agtaatcctgaaggtagtagagatgttgttagagcttgtaacaaggctaagattcctgcatttggtccaatttgggactcttgaatggctcaaaattaca |
200 |
Q |
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| T |
39297096 |
agtaatcctgaaggtagtagagatgttgttagagcttgtaacaaggctaaaattcctgcttttggtccaatttgggactcttgaaaggttctaa---aca |
39297192 |
T |
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| Q |
201 |
caaaattttaaggcaagtaatttgttact |
229 |
Q |
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||| || ||||||||||||||||||||| |
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| T |
39297193 |
aaaacttgtaaggcaagtaatttgttact |
39297221 |
T |
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