View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_low_17 (Length: 352)
Name: NF3872_low_17
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_low_17 |
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| [»] chr6 (5 HSPs) |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 15611144 - 15610813
Alignment:
| Q |
20 |
cgtattttattaggatttttacccactataaaatgactaaatcttgttctattatgtaacgcaagaaaaataacttgtcctgtgtgttacataaaaagag |
119 |
Q |
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| T |
15611144 |
cgtattttattaggttttatacccactataaaatgaccaaatcttgttctattatgtaacgcaagaaaaataacttgtcctgtgtgttacataaaaagag |
15611045 |
T |
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| Q |
120 |
gggatatatatggctatcattaagtttctttatacaatgtttctatttattttactatttgtagttccagccaaagttgacggtaaacaannnnnnnacc |
219 |
Q |
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| T |
15611044 |
gggatatatatggctatcattaagtttatttatacaatgtttctatttattttactatttgtagttccaaccaaagttgacggtaaacaattttcttacc |
15610945 |
T |
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| Q |
220 |
cttcaattgttcttttttaagttgttatttatacacaannnnnnnnnncttcttctgatgaagttaaattaacccacttaaattgatactagggagaatc |
319 |
Q |
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| T |
15610944 |
cttcaattgttcttttttaagttgttatttatacacaa-tttttttttctttttctgatgaagttaaattaacccacctaaattgatactagggagaatc |
15610846 |
T |
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| Q |
320 |
acacatgatcccttaacaaggagtacagtctca |
352 |
Q |
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| T |
15610845 |
acacatgatccctcaacaaggagtacagtctca |
15610813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 28 - 257
Target Start/End: Complemental strand, 15601549 - 15601322
Alignment:
| Q |
28 |
attaggatttttacccactataaaatgactaaatcttgttctattatgtaacgcaagaaaaataacttgtcctgtgtgttacataaaaagaggggatata |
127 |
Q |
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| T |
15601549 |
attaggatttttacccactataaaatgaccaaatcttgttctattatgcaac--aagaaaaataacctgtcctgtgtgttacataaaaagaggggaaata |
15601452 |
T |
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| Q |
128 |
tatggctatcattaagtttctttatacaatgtttctatttattttactatttgtagttccagccaaagttgacggtaaacaannnnnnnacccttcaatt |
227 |
Q |
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| T |
15601451 |
tatggctatcattaagttcatttatacaatgtttctatttattttcctatttgtaattccaaccaaagttgacggtaaacaatttttttacccttcaatt |
15601352 |
T |
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| Q |
228 |
gttcttttttaagttgttatttatacacaa |
257 |
Q |
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| T |
15601351 |
gttcttttttaagttgttgtttatacacaa |
15601322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 15597630 - 15597394
Alignment:
| Q |
19 |
acgtattttattaggatttttacccactataaaatgactaaatcttgttctattatgtaacgcaagaaaaataacttgtcctgtgtgttacataaaaaga |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| | ||||||||||||||| |||||| |
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| T |
15597630 |
acgtatttcattaggatttttacccactataaaatgaccaaatcttgttctattatgcaac--aagaaaaataacctatcctgtgtgttacatgaaaaga |
15597533 |
T |
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| Q |
119 |
ggggatatatatggctatcattaagtttctttatacaatgtttctatttattttactatttgtagttccagccaaagttgacggtaaacaannnnnnnac |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||| || |
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| T |
15597532 |
ggggatatatatggctatcattaagtttatttatacaatgtttctatttattttcctatttgcagttacaaccaaagttgacggtaaacaaattttttac |
15597433 |
T |
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| Q |
219 |
ccttcaattgttcttttttaagttgttatttatacacaa |
257 |
Q |
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| T |
15597432 |
cctttttttgtccttttttacgttgttgtttatacacaa |
15597394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 15589377 - 15589141
Alignment:
| Q |
22 |
tattttattaggatttttacccactataaaatgactaaatcttgttctattatgtaacgcaagaaaaataacttgtcctgtgtgttacataaaaagaggg |
121 |
Q |
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||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||| ||| || | |||||||||||||||||| |
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| T |
15589377 |
tattttattaggatttttacctactataaagtgatcaaatcttgttctattatgtaac--aagaaaaataacctgttctatctgttacataaaaagaggg |
15589280 |
T |
|
| Q |
122 |
gatatatatggct---atcattaagtttctttatacaatgtttctatttattttactatttgtagttccagccaaagttgacggtaaacaannnnnnnac |
218 |
Q |
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| T |
15589279 |
gaaatatatggctgcaatcattaaatttatttacacaatgtttctatttattttcctatttgtagttccaaccaaagttgacggtaaaaaaaatatttac |
15589180 |
T |
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| Q |
219 |
ccttcaattgttcttttttaagttgttatttatacacaa |
257 |
Q |
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| T |
15589179 |
ccttcaattgtctttctttacgttgttttttgtacacaa |
15589141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 6608080 - 6608127
Alignment:
| Q |
279 |
gaagttaaattaacccacttaaattgatactagggagaatcacacatga |
327 |
Q |
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| T |
6608080 |
gaagttaaattagcccactcaaattgata-tagggagaatcaaacatga |
6608127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 16662 - 16615
Alignment:
| Q |
279 |
gaagttaaattaacccacttaaattgatactagggagaatcacacatga |
327 |
Q |
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| T |
16662 |
gaagttaaattagcccactcaaattgata-tagggagaatcaaacatga |
16615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 33464574 - 33464527
Alignment:
| Q |
279 |
gaagttaaattaacccacttaaattgatactagggagaatcacacatga |
327 |
Q |
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| T |
33464574 |
gaagttaaattagcccactcaaattgata-tagggagaatcaaacatga |
33464527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 32114699 - 32114743
Alignment:
| Q |
283 |
ttaaattaacccacttaaattgatactagggagaatcacacatga |
327 |
Q |
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| T |
32114699 |
ttaaattaacccacttaaattgatacttgagagaattaaacatga |
32114743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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