View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_low_20 (Length: 337)
Name: NF3872_low_20
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 32855684 - 32855953
Alignment:
| Q |
18 |
gtggaatccggggcgtgtctggtgttgaattgtgatttgctttgagactgtattataaagtttaaaagctcacatcaattaagagaagagttaccctgct |
117 |
Q |
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| T |
32855684 |
gtggaatccggggcgtgtctggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagctcacatcaatcaagagaagagttaccctgct |
32855783 |
T |
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| Q |
118 |
ctacatgctcaaatcatcattagtcattctgatactcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaatgc |
217 |
Q |
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| T |
32855784 |
ctacatgctcaaatcatcattagtcattctgatactcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaatgc |
32855883 |
T |
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| Q |
218 |
aacaacaggaaagcaggaatgtgtgcagtgcaagaccacatctcccacgcttgtagttttatttttccct |
287 |
Q |
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| T |
32855884 |
aacaacaggaaagcaggaatgtgtgcagtgcaagaccacatctcccacgcttgtagttttatttttccct |
32855953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 32850285 - 32850489
Alignment:
| Q |
37 |
tggtgttgaattgtgatttgctttgagactgtattataaagtttaaaagctcacatcaattaagagaagagttaccctg--------ctctacatgctca |
128 |
Q |
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| T |
32850285 |
tggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagctcacatcaattgagagaagagttaccctgctctacgcctctacatgctca |
32850384 |
T |
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| Q |
129 |
aatcatcattagtcattctgatac--------------tcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaa |
214 |
Q |
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| T |
32850385 |
a---atcattagtcatgctgatacaactttagggattatcaggtcctttccagctgaaaataccaactgctacctgttggggttgctaaaagttactaag |
32850481 |
T |
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| Q |
215 |
tgcaacaa |
222 |
Q |
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| T |
32850482 |
tgcaacaa |
32850489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 32850520 - 32850561
Alignment:
| Q |
245 |
gtgcaagaccacatctcccacgcttgtagttttatttttccc |
286 |
Q |
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| T |
32850520 |
gtgcaagaccccatctcccacgattgtagttttatttttccc |
32850561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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