View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3872_low_23 (Length: 288)

Name: NF3872_low_23
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3872_low_23
NF3872_low_23
[»] chr5 (4 HSPs)
chr5 (19-273)||(1587223-1587477)
chr5 (19-273)||(1590746-1591000)
chr5 (33-245)||(1580751-1580963)
chr5 (33-245)||(1603852-1604064)
[»] chr3 (1 HSPs)
chr3 (19-273)||(19270329-19270583)
[»] chr7 (2 HSPs)
chr7 (33-195)||(39616013-39616175)
chr7 (214-261)||(39616233-39616280)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 1587477 - 1587223
Alignment:
Q  19 aaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587477 aaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatca 1587378  T
Q  119 gtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||| |||||||    
T  1587377 gtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttct 1587278  T
Q  219 tcgtggtctttggtttaactcttctttccacataagacatgctgctaccttcatc 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587277 tcgtggtctttggtttaactcttctttccacataagacatgctgctaccttcatc 1587223  T

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Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 1590746 - 1591000
Alignment:
Q  19 aaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatca 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1590746 aaaatcgactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgatatttttgatatca 1590845  T
Q  119 gtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||| |||||||    
T  1590846 gtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttct 1590945  T
Q  219 tcgtggtctttggtttaactcttctttccacataagacatgctgctaccttcatc 273  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  1590946 tcgtggtctttggtttaacacttctttccgcataaaacatgctgctaccttcatc 1591000  T

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Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 245
Target Start/End: Complemental strand, 1580963 - 1580751
Alignment:
Q  33 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 132  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||||||  || ||||||  ||||||||||||| |||||||||||||||||| |||||    
T  1580963 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc 1580864  T
Q  133 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtctttggt 232  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| |||||| ||       |||  ||||||||||||| ||||||||    
T  1580863 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggt 1580764  T
Q  233 ttaactcttcttt 245  Q
    || ||||||||||    
T  1580763 ttcactcttcttt 1580751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 1603852 - 1604064
Alignment:
Q  33 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 132  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||||||  || ||||||  ||||||||||||| |||||||||||||||||| |||||    
T  1603852 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc 1603951  T
Q  133 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtctttggt 232  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| |||||| ||       |||  ||||||||||||| ||||||||    
T  1603952 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggt 1604051  T
Q  233 ttaactcttcttt 245  Q
    || ||||||||||    
T  1604052 ttcactcttcttt 1604064  T

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Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 19270329 - 19270583
Alignment:
Q  19 aaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatca 118  Q
    ||||||||||||||||||||||| || |||||| |||||||||||||||||  |||||| ||| ||| |||||||||||| |||||||| ||||||||||    
T  19270329 aaaatcaactttgacttctttaatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttgatatca 19270428  T
Q  119 gtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttct 218  Q
    |||||||| |||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |||||| ||       |||||||||||||    
T  19270429 gtgccattcaactctttgatcttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttct 19270528  T
Q  219 tcgtggtctttggtttaactcttctttccacataagacatgctgctaccttcatc 273  Q
    ||||| |||||||||| |||||||||||  | | ||||||||| |||||||||||    
T  19270529 tcgtgctctttggtttcactcttctttctgcgtgagacatgcttctaccttcatc 19270583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 39616013 - 39616175
Alignment:
Q  33 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 132  Q
    |||||||||| ||||||||||||||| ||||| | ||   || |||||||||| ||||||| ||  ||||||||| | |||||||||||||||| |||||    
T  39616013 cttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccattcaactc 39616112  T
Q  133 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc 195  Q
     |||||||||||||  || | |||||| |||||||| |||||| | | |||||||||||||||    
T  39616113 cttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatc 39616175  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 39616233 - 39616280
Alignment:
Q  214 cttcttcgtggtctttggtttaactcttctttccacataagacatgct 261  Q
    |||||||||||||||||||||   |||||||||| |||||||||||||    
T  39616233 cttcttcgtggtctttggtttcgttcttctttccgcataagacatgct 39616280  T

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