View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_low_25 (Length: 279)
Name: NF3872_low_25
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 40698009 - 40697775
Alignment:
| Q |
22 |
gccacatgtataacatttagtacaggaccatatatacagctaattccaccaataggaataaagagaaagaaattttttcagaaaaga------------- |
108 |
Q |
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| T |
40698009 |
gccacatgtataacatttagtacaggaccatatatacagctaattccaccaataggaataaagagaaagaaattttttcagaaaagaaaaaagagagaga |
40697910 |
T |
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| Q |
109 |
----gaaagtaaattaaccaccaattacataag-acactatggttttcaaccaacaaatagacgcgttcctttctctatatattgcccaacctccctcta |
203 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40697909 |
aagagaaagtaaattaaccaccaattacataagcacactatggttttcaaccaacaaatagacgcgttcctttctctatatattgcccaacctccctcta |
40697810 |
T |
|
| Q |
204 |
ctgtttccactcaaaatagatcaaaatcatccttt |
238 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40697809 |
ctgtttccactcaaaatagatcaaaatcatccttt |
40697775 |
T |
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