View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3872_low_32 (Length: 250)

Name: NF3872_low_32
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3872_low_32
NF3872_low_32
[»] chr2 (3 HSPs)
chr2 (155-250)||(40697549-40697642)
chr2 (12-91)||(40697403-40697482)
chr2 (23-87)||(40697252-40697316)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 40697549 - 40697642
Alignment:
Q  155 gagtgatatcacaaatccttatatcaaggaggagtactccaagaagtaaagataatatatatatacacttagaaataaatcatataattaaaatat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
T  40697549 gagtgatatcacaaatccttatatcaaggaggagtactccaagaagtaaagata--atatatatacacttagaaataaatcatataattaacatat 40697642  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 40697403 - 40697482
Alignment:
Q  12 acagacaaatagttacaacagttcaaaaccaattatagattacactaaattgtgacaatcagctccatactgaagagaag 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40697403 acagacaaatagttacaacagttcaaaaccaattatagattacactaaattgtgacaatcagctccatactgaagagaag 40697482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 40697252 - 40697316
Alignment:
Q  23 gttacaacagttcaaaaccaattatagattacactaaattgtgacaatcagctccatactgaaga 87  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  40697252 gttacaacaattctaaaacaattatagattacactaaattgtgacaatcagctccttactaaaga 40697316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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