View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_low_35 (Length: 248)
Name: NF3872_low_35
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 29228543 - 29228300
Alignment:
| Q |
1 |
ttatatcaaagtataaactctgatatctttattcgacctgctagtccatatttatatgcataacattttgtgctaattgatggatagtgctctaattagg |
100 |
Q |
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| T |
29228543 |
ttatatcaaagtataaact--gatatctttattcgacctgctagtccatatttatatgcataacattttgtgttaattgatggatagtgctctaattagg |
29228446 |
T |
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| Q |
101 |
aagacttttagcccgtccattgctcaaagaaattaatgctatggttctgaattcgaaccatttttctggtgaaaatgcatata-ttgttgaatgatggcc |
199 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29228445 |
aagacttttagcccgtcaattgctcaaagaaattaatgctatggttctgaattctaaccatttttctggtgaaaatgcatatatttgttgaatgatggcc |
29228346 |
T |
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| Q |
200 |
tgcctaatgcatacaagactaatgttaatcagccgcctttgattct |
245 |
Q |
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| T |
29228345 |
tgcctaatgcataaaagactaatgttaatcagccgccattgattct |
29228300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 29233886 - 29233776
Alignment:
| Q |
130 |
aaattaatgctatggttctgaattcgaacca-tttttctggtgaaaatgcatatattgttgaatgatggcctgcctaatgcatacaagactaatgttaat |
228 |
Q |
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| T |
29233886 |
aaattaatgctatggttttaaattccaaccaatttttctggtgaaaacgcatatattgttgaatgatg----gcctaatgcatacaagactaatgttaat |
29233791 |
T |
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| Q |
229 |
cagccgcctttgatt |
243 |
Q |
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||| |||| |||||| |
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| T |
29233790 |
cagtcgccattgatt |
29233776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 29237668 - 29237558
Alignment:
| Q |
130 |
aaattaatgctatggttctgaattcgaacca-tttttctggtgaaaatgcatatattgttgaatgatggcctgcctaatgcatacaagactaatgttaat |
228 |
Q |
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||||||||||||||||| | ||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29237668 |
aaattaatgctatggttttaaattccaaccaatttttctggtgaaaacgcatatattgttgaatgatg----gcctaatgcatacaagactaatgttaat |
29237573 |
T |
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| Q |
229 |
cagccgcctttgatt |
243 |
Q |
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||| |||| |||||| |
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| T |
29237572 |
cagtcgccattgatt |
29237558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 29237789 - 29237749
Alignment:
| Q |
23 |
atatctttattcgacctgctagtccatatttatatgcataa |
63 |
Q |
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| T |
29237789 |
atatctttattccacctgctagtccatatttatatgcataa |
29237749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 243
Target Start/End: Complemental strand, 29224436 - 29224318
Alignment:
| Q |
129 |
gaaattaatgctatggttctgaattcgaaccattttt--ctggtgaa-----aatgcatatattgttgaatgatggcctgcctaatgcatac-aagacta |
220 |
Q |
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|||||||||||||||||| | ||||| ||||||||| |||||||| ||||||||||||||||| |||| |||||||||||||| |||||| |
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| T |
29224436 |
gaaattaatgctatggtttttaattcccaccatttttttctggtgaatagaaaatgcatatattgttgattgat----tgcctaatgcatacaaagactg |
29224341 |
T |
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| Q |
221 |
atgttaatcagccgcctttgatt |
243 |
Q |
| |
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||||||||||||| || |||||| |
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| T |
29224340 |
atgttaatcagccaccattgatt |
29224318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 29234009 - 29233967
Alignment:
| Q |
21 |
tgatatctttattcgacctgctagtccatatttatatgcataa |
63 |
Q |
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|||||| ||||||| ||||| |||||||||||||||||||||| |
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| T |
29234009 |
tgatatatttattccacctgttagtccatatttatatgcataa |
29233967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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