View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_low_4 (Length: 523)
Name: NF3872_low_4
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 19 - 513
Target Start/End: Complemental strand, 39659947 - 39659453
Alignment:
| Q |
19 |
aagccgtcttgggatcaattgcaatagctgcatcatacaaggataacgcctccgcgaatcttccattcttataatcctcattccccattattttcaactg |
118 |
Q |
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| T |
39659947 |
aagccgtcttgggatcaattgcaatagctgcatcatacaaggataacgcctccgcgaatcttccattcttataatcctcattccccattattttcaactg |
39659848 |
T |
|
| Q |
119 |
ctctggatccattctagttgatatagccctacaaagtgaaccaccacctgatttttcttccttcaacttggtggatgattttgtttctttacgaacactc |
218 |
Q |
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| T |
39659847 |
ctctggatccattctagttgatatagccctacaaagtgaaccaccacctgatttttcttccttcaacttggtggatgattttgtttctttacgaacactc |
39659748 |
T |
|
| Q |
219 |
gtcacattatttgtgtgtcctcctcttgcatttgaatttgcattttcaaaatactggttataattatccattgcatttgaataactattatttttatctc |
318 |
Q |
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| T |
39659747 |
gtcacattatttgtgtgtcctcctcttgcatttgaatttgcattttcaaaatactggttataattatccattgcatttgaataactattatttttatctc |
39659648 |
T |
|
| Q |
319 |
cttgcctaagattccctaaatttccatacaacataacattgccagacgaagcacgaataagagtactacttcctttggatttttgatgatcattgatcat |
418 |
Q |
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| T |
39659647 |
cttgcctaagattccctaaatttccatacaacataacattgccagacgaagcgcgaataagagtactacttcctttggatttttgatgatcattgatcat |
39659548 |
T |
|
| Q |
419 |
gctttctaactcacctgaaataccaacagcttcttttggaaccctcctaccttgattaacatacccctgagtagttgatgaatttgaaacctttg |
513 |
Q |
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| T |
39659547 |
gctttctaactcacctgaaataccaacagcttcttttggaaccctcctaccttgattaacatacccctcagtagttgatgaatttaaaacctttg |
39659453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 119 - 513
Target Start/End: Original strand, 4285958 - 4286351
Alignment:
| Q |
119 |
ctctggatccattctagttgatatagccctacaaa--gtgaaccaccacctgatttttcttccttcaacttg------gtggatgattttgtttctttac |
210 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||| || |
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| T |
4285958 |
ctctagatccattctagttgatatagccctacaaaaagtgaaccaccacctgaatttccttctttcaacttgttgttggtggatgattttgtttcttcac |
4286057 |
T |
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| Q |
211 |
gaacactcgtcacattatttgtgtgtcctcctcttgcatttgaatttgcattttcaaaatactggttataattatccattgcatttgaataactattatt |
310 |
Q |
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| T |
4286058 |
taacactcatcacattatttgtgtgtcctcctcttgcatttgaatttgcattttcaaaatacttgttataattatccattgcatttgaataactattatc |
4286157 |
T |
|
| Q |
311 |
tttatctccttgcctaagattccctaaatttccatacaacataacattgccagacgaagcacgaataagagtactacttcctttggatttttgatgatca |
410 |
Q |
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| T |
4286158 |
tttatctccttgcctaagattccctaaatatccatacaacaaagcattgccagacgaagcgcgaata--------actt-ctttggatattttatgatca |
4286248 |
T |
|
| Q |
411 |
ttgatcatgctttctaactcacctgaaataccaacagcttcttttggaaccctcctaccttgattaacatacccctgagtagttgatgaatttgaaacct |
510 |
Q |
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|| ||||||||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
4286249 |
ttaatcatgctttctaactctcccgtgataccaacaacttctcttggaaccctcctaccttgattaacatacccatgggtagttgatgaatttgaaacct |
4286348 |
T |
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