View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_low_41 (Length: 227)
Name: NF3872_low_41
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_low_41 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 6685428 - 6685648
Alignment:
| Q |
7 |
acccagtcattctacacttctacataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttc |
106 |
Q |
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| T |
6685428 |
acccagtcattctacacttttacataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttc |
6685527 |
T |
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| Q |
107 |
tttggtatatactgatcaacaacaacttcatgtttgaggattggaggtaaccctctgccatccataatagaaccaactcgttcttttcgatttcataaca |
206 |
Q |
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| T |
6685528 |
tttggtatatactaatcaacaacaacttcatgtttgaggattggaggtaaccctctgccatccataatagaatcaactcgttcttttcgatttcataaca |
6685627 |
T |
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| Q |
207 |
cttgggattcaaagagcaata |
227 |
Q |
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| T |
6685628 |
cttgggattcaaagagcaata |
6685648 |
T |
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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 18768007 - 18768110
Alignment:
| Q |
23 |
cttctacataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttctttggtatatactgat |
122 |
Q |
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| T |
18768007 |
cttctacataatcaaactaaattattttctgcataatcaaacaaccaaatatttaaaaagtataaacgagtaccggttaatttcttttgtatatactgat |
18768106 |
T |
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| Q |
123 |
caac |
126 |
Q |
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|||| |
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| T |
18768107 |
caac |
18768110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 13850544 - 13850639
Alignment:
| Q |
30 |
ataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttctttggtatatactgatcaac |
126 |
Q |
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| T |
13850544 |
ataatcaaactaaattatttt-tgcataattaaacaacctaatatttaaaaagtataaacgagtaccagttaatttcttttgtatatactgatcaac |
13850639 |
T |
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